PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001011G0420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 384aa    MW: 42280.7 Da    PI: 8.8805
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001011G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46e-08647338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  PH01001011G0420  6 ARACDGCLRRRARWYCAADDAFLCQGCDSSVHSAnplarrHE 47
                     578*****************************6567777776 PP
2CCT68.61.6e-23333376144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  PH01001011G0420 333 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 376
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.466451IPR000315B-box-type zinc finger
SMARTSM003366.1E-11451IPR000315B-box-type zinc finger
PfamPF006432.6E-6748IPR000315B-box-type zinc finger
CDDcd000212.14E-9751No hitNo description
PfamPF062036.2E-18333375IPR010402CCT domain
PROSITE profilePS5101716.122333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGGKAARACD GCLRRRARWY CAADDAFLCQ GCDSSVHSAN PLARRHERLR LRQLSPLLPP  60
SAGAASRARR GGDEVVPAWF KRKARTPRSH AKSVEQLLSR PLVVPEGAVG DSPEERKCEG  120
EIEEEELLYR VPIFDPTLVP EGAVGDSPEE RKYAVLPRQL RTDGRRAQGV RRRHGGLLGR  180
GLDDGNEEDS FYMETLGLIE PTEADGGRVK QETDVKARGM LACGLELEPE ASGEMLDINF  240
NYGSPQATPD EKAASTDGST DAQFLQRSLA LSLNYEAIIA SWGSSPWTDG ERPHVKLEDC  300
WPHDYSGVWM VGGVVGHGGD GVGMPRLGMD GGREARVTRY REKRRTRLFS KKIRYEVRKL  360
NAEKRPRMKG RFVKRATAGG SVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343359RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001011G0420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412491e-134AK241249.1 Oryza sativa Japonica Group cDNA, clone: J065129J23, full insert sequence.
GenBankAK2878361e-134AK287836.1 Oryza sativa Japonica Group cDNA, clone: J065191O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155509.11e-164zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A3Q8AYR80.0A0A3Q8AYR8_9POAL; Constans-like protein
STRINGMLOC_7814.11e-159(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-45B-box type zinc finger protein with CCT domain