PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001003G0160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 23841.1 Da PI: 4.7748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p + +r++lg++ t+e Aa+a++aa ++l+g PH01001003G0160 37 QYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 86 6*****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 36 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-19 | 37 | 94 | No hit | No description |
Pfam | PF00847 | 3.9E-11 | 37 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.102 | 37 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 37 | 95 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-35 | 37 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVKNPSKTEH GGGGGGAASN AAESCSGSGS KQTVVRQYKG VRMRSWGSWV SEIRAPHQKR 60 RIWLGSYATP EAAARAYDAA LLCLKGSDAV LNFPSSSSSS SHPVDNRHSD SAAPPDMSPR 120 SIQRVAAAAA AAFDSGIVDD SCSSSAEATT PTSASLSTLG SADVQEHATS SSAAANASSL 180 PEGEELWTEL DAFASPKFMD FIAAGATPFS SSWEEPEEDG ELMRLWSFC* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001003G0160 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189509.1 | 1e-85 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A3B6HPM9 | 1e-88 | A0A3B6HPM9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QRC6 | 1e-88 | A0A446QRC6_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_18663793B.1 | 2e-89 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 4e-25 | ERF family protein |