PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000997G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 418aa    MW: 46614.5 Da    PI: 4.9219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000997G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.22.5e-174115210128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                      +deelv ++L+++ +g++l+  +v+  ++   ++P+  +       + wy  +s  ++ y +g+++ r ++ gyWk+    + + + +++ vg+
  PH01000997G0140  41 RDEELV-RFLAERKAGDPLPY-NVLVGMNFSLIDPQITH-L---VGNIWYMnWSDDQQPYDNGENAIRNAEYGYWKSVDALR-IPT-STAIVGV 126
                      69****.99***********9.99***********9775.2...34678753777888899***************988755.554.5899*** PP

              NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                      k +L fy+g+ap+g++t Wvmhey++
  PH01000997G0140 127 KISLEFYEGQAPSGKRTGWVMHEYQV 152
                      ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.86232173IPR003441NAC domain
SuperFamilySSF1019416.41E-2535173IPR003441NAC domain
PfamPF023651.2E-941152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGWYLVGGSI RLGGVELVRT IMCPPIPGLA LLNISISDSW RDEELVRFLA ERKAGDPLPY  60
NVLVGMNFSL IDPQITHLVG NIWYMNWSDD QQPYDNGENA IRNAEYGYWK SVDALRIPTS  120
TAIVGVKISL EFYEGQAPSG KRTGWVMHEY QVEQNDEANI PQDYKSLCTI FLQGDKKFNA  180
EDQQISLNAN APHDCLESYL QYLAEIEEQN AAMNSQIVAS NQHNFSSSKG QDENKTHNAA  240
DAIAFHHALA NEAYIEMNDL LNSEASASTS EYSSRRSMIS EEYFDSDAFL REILNDCNTT  300
DEEHKDCKLS ITAPTKSDHV VTSLPEQGLV HNHDNNARVS GTSLEKSVPD GERDQHPNEE  360
CPQHNPSTSS CFPSSHVKRS RSNSSNSSQG STKSPQRDRS ISKLGKIGKK YCCFRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000997G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195723.11e-175protein ATAF2-like
TrEMBLA0A446LTT20.0A0A446LTT2_TRITD; Uncharacterized protein
STRINGEMT306611e-160(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-18NAC domain containing protein 52