PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000996G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 858aa    MW: 93186 Da    PI: 6.5051
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000996G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54.1e-173188457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q kvWFqNrR +ek+
  PH01000996G0010 31 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNVEPKQMKVWFQNRRCREKQ 88
                     6789****************************************************97 PP
2START170.61.1e-531793862204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi  g  g+++l
  PH01000996G0010 179 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPMGngGTIEL 271
                      68999*****************************************************.8888888888***************99999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+
  PH01000996G0010 272 IYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRP 365
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  PH01000996G0010 366 LYESPKILAQKMTIAALRHIR 386
                      ****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-171688IPR009057Homeodomain-like
PROSITE profilePS5007114.9492589IPR001356Homeobox domain
SMARTSM003898.7E-132793IPR001356Homeobox domain
SuperFamilySSF466898.13E-162992IPR009057Homeodomain-like
CDDcd000861.67E-143090No hitNo description
PfamPF000469.7E-153188IPR001356Homeobox domain
CDDcd146861.82E-682121No hitNo description
PROSITE profilePS5084826.833169369IPR002913START domain
CDDcd088752.85E-68173389No hitNo description
Gene3DG3DSA:3.30.530.201.8E-24177369IPR023393START-like domain
SMARTSM002342.0E-46178388IPR002913START domain
SuperFamilySSF559617.28E-39179389No hitNo description
PfamPF018521.9E-51179386IPR002913START domain
PfamPF086701.1E-50714856IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MAAAMVAAVH GGKDRSSPGG GGAPQVDTGK YVRYTPEQVE ALERVYSECP KPSSLRRQQL  60
IRECPILSNV EPKQMKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV  120
SRLVYDNGYM RQQLHNPSVA TTDTSCESVV TSGQHHQQQN PAAPCPQRDA NNPAGLLAIA  180
EETLAEFLSK ATGTAVDWVQ MVGMKPGPDS IGIIAVSHNC SGVAARACGL VSLEPTKVAE  240
ILKDRPSWYR DCRCVDVLHV IPMGNGGTIE LIYMQTYAPT TLAAPRDFWT LRYTSGLEDG  300
SLVICERSLT QSTGGPSGPN TPNFVRAEVL PSGYLIRPCE GGGSMIHIVD HIDLDAWSVP  360
EVLRPLYESP KILAQKMTIA ALRHIRQIAH ESSGEMPYGG GRQPAVLRTF SQRLSRGFND  420
AVNGFPDDGW SLMSSDGAED VTIAINSSPN KLVGSHVNSS QLFSAIGGGI LCAKASMLLQ  480
NVPPALLVRF LREHRSEWAD PGVDAYSAAA LRASPYAVPG LRASGFMGSQ VILPLAHTLE  540
HEEFLEVIRL EGHSLCHDEV VLSRDMYLLQ LCSGVDENAA GACAQLVFAP IDESFADDAP  600
LLPSGFRVIP LDAKTDAPSA TRTLDLASTL EVGSGGTTRT SNDTSSTCNT RSVLTIAFQF  660
SYENHLRESV AAMARQYVRT VVASVQRVAM AIAPSRLGGQ IEMKNPPGSP EAHTLARWIG  720
KSYRFHTGAE LLHTDSQSTD SSLKALWQHS DSIMCCSLKA APVFTLANQA GLDMLETTLI  780
ALQDISLEKI LDDDGRKALC SEFPKIMQQG FAYLPGGVCV SSMGRPVSYE QAVAWKVLSD  840
DDSPHCLAFM FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000996G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982339.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLK4A5S40.0K4A5S4_SETIT; Uncharacterized protein
STRINGSi034228m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]