PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000991G0370

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

LBD

Protein Properties

Length: 192aa MW: 20957.8 Da PI: 7.4703

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000991G0370	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.3	7.3e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C++dCv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ +l PH01000991G0370 8 PCASCKLLRRRCTRDCVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQMQL 101 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e PH01000991G0370 102 AVAQAE 107 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MAGSGSTPCA SCKLLRRRCT RDCVFAPYFP PEDPHKFAIV HKVFGASNVS KMLQELPAQQ 60 RADAVSSLVY EANARMRDPV YGCVGAISYL QQQVSQLQMQ LAVAQAEILC IQQIQHDEHD 120 APASASASAS QQLQKHQQQQ HTDDRAYNGL TMQSGLMSTL NNAAHQLTGF GSAGSTAMML 180 QEACLKKESL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	3	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	3	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000991G0370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	0.0	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661028.1	2e-88	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A368S2P5	4e-87	A0A368S2P5_SETIT; Uncharacterized protein
STRING	Si026864m	5e-85	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-60	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]