PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000979G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 474aa    MW: 50691.5 Da    PI: 9.0286
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000979G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093153472254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +++  LA+++gL+ +qV++WF N R +
  PH01000979G0260 315 HPYPTDADKHMLAAQTGLSRNQVSNWFINARVR 347
                      89*****************************88 PP
2BELL96.52.2e-31183253272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      r e ++kkakLl ++eeV+krYkqy++q+q+v+ssFe v glg a+pY+s  lkaiSrhFr ++  i++qi
  PH01000979G0260 183 RPEFREKKAKLLYMQEEVCKRYKQYHQQMQMVVSSFESVPGLGCATPYASSVLKAISRHFRRVRSIISSQI 253
                      67899****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-42120251IPR006563POX domain
PfamPF075265.9E-35125250IPR006563POX domain
PROSITE profilePS5007111.742288351IPR001356Homeobox domain
CDDcd000864.56E-13291352No hitNo description
SMARTSM003892.9E-10291355IPR001356Homeobox domain
SuperFamilySSF466892.91E-17293359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-28294355IPR009057Homeodomain-like
PfamPF059206.1E-19308347IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSAAAGFADP PPHVAQRSRR DKLRFPPASD VMLPPPYDDA ADLGYLDAVV APPPSDQWLT  60
PQYDASPSWA RPKLEHGEAR GFTTQQAAAL SLTLSPAPQE LPPAYGGPPP AAARPLGPFT  120
GYAAVLKGSR FLRPAQQLLD EICTALVGAE GTSRSAGAGG SYSLPSPSSL ASSTDTGDRQ  180
HQRPEFREKK AKLLYMQEEV CKRYKQYHQQ MQMVVSSFES VPGLGCATPY ASSVLKAISR  240
HFRRVRSIIS SQIQYMSRLL GEELLSLPSS SSGGKAVARS LGLTDQSHPV WRPQRGLPER  300
AVSVLRAWLF DHFLHPYPTD ADKHMLAAQT GLSRNQVSNW FINARVRLWK PMVEEIHMLE  360
TRGSANANAS SDRSNPGAAA LSNHTAGPLP LPVAAGGHQQ QMLEQCLDVA PPPMGIQVGG  420
GGQLMMSFGA APFAGAADMG GLGAVSLTLG LRRDVSYHQQ QQFGGHILGD LVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15297355563Homeobox protein Meis2
4xrm_B2e-15297355563Homeobox protein Meis2
4xrs_A2e-15297354158Homeobox protein Meis1
4xrs_B2e-15297354158Homeobox protein Meis1
5bng_A2e-15297355159Homeobox protein Meis2
5bng_B2e-15297355159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000979G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597436.11e-120BEL1-like homeodomain protein 9
TrEMBLA0A1R3L5831e-116A0A1R3L583_ASPOF; Uncharacterized protein
TrEMBLA0A2H3XQS51e-115A0A2H3XQS5_PHODC; BEL1-like homeodomain protein 9
STRINGXP_008787379.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16049811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-80BEL1-like homeodomain 8