PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000978G0590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NF-YB | ||||||||
Protein Properties | Length: 203aa MW: 21909.6 Da PI: 5.0308 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 36.3 | 1.3e-11 | 117 | 163 | 48 | 94 |
NF-YB 48 seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 s+a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ + PH01000978G0590 117 SDANDMCKESKRQTINADDVLKALDEMEFPEFVEPLRTSLQEFRNKN 163 78******************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-6 | 34 | 86 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.51E-6 | 37 | 86 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.16E-15 | 117 | 198 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.1E-18 | 117 | 201 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.51E-6 | 119 | 142 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAGETKEGES QPQAAQGEGT KPAPAAAVAM TEAEVEDLPK AIVRRLVKDK LAQIATGGAA 60 EVIVNKDAMA AFAESARIFI HYLSATSVPH SLPFHSSAPS NSCSLFSVCV YGVREKSDAN 120 DMCKESKRQT INADDVLKAL DEMEFPEFVE PLRTSLQEFR NKNAVKRSGT SKKQAEKRRK 180 LDKESLPQEP NDAADDAKAD ED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000978G0590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005546 | 1e-56 | AP005546.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1003_C09. | |||
GenBank | AP014965 | 1e-56 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-56 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006661566.1 | 2e-78 | PREDICTED: DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | J3N0A3 | 5e-77 | J3N0A3_ORYBR; Uncharacterized protein | ||||
STRING | OB09G26820.1 | 9e-78 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 5e-28 | nuclear factor Y, subunit B11 |