PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000966G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BES1
Protein Properties Length: 349aa    MW: 36674.2 Da    PI: 8.498
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000966G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822211.52.2e-65151572145
           DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                      g+gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkg+kp+e+++++g+s s sp+ss+q
  PH01000966G0030  15 GGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGCKPPERMDVIGCSVSPSPCSSYQ 108
                      799******************************************************************************************* PP

           DUF822  96 sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlsl 145
                              +sp++sy+asp+sssfps +s+ +++++++       + +lp+l++ s+
  PH01000966G0030 109 --------PSPRASYNASPTSSSFPSGASSPFLPHSNNmvngvdgNPILPWLKTFSN 157
                      ........99****************9999999999888888888889999988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.3E-6615155IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MATGGGGGLG AAGVGGGRMP TWRERENNKR RERRRRAIAA KIFAGLRAHG GYKLPKHCDN  60
NEVLKALCNE AGWVVEPDGT TYRKGCKPPE RMDVIGCSVS PSPCSSYQPS PRASYNASPT  120
SSSFPSGASS PFLPHSNNMV NGVDGNPILP WLKTFSNSPT PLQLPPLLIH GGSISAPVTP  180
PLSSPTARTP RMKTGWDEST VQPPWHGSNS PCVVNSTPPS PGRSMVPDPA WLAGIQISST  240
SPSSPTFSLV SSNPFSVFKE AIPQGSSSRM CTPGQSGTCS PVIPGMPRHP DVHMMDVVSD  300
EFAFGSSCNG GQLAAGMVRA WEGERIHEDS GSDDLELTLG SSRTRADA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-241888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000966G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188462.11e-175protein BZR1 homolog 2
SwissprotQ0JPT41e-175BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A0D9UY131e-180A0A0D9UY13_9ORYZ; Uncharacterized protein
TrEMBLA0A287KHX21e-180A0A287KHX2_HORVV; Uncharacterized protein
STRINGLPERR01G06210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.17e-81BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]