PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000953G0730
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 442aa    MW: 49834.4 Da    PI: 7.2353
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000953G0730genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.86.4e-101882132651
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQ 51 
                       A+Pk+ilelm+v+ Lt  +v+SHLQ
  PH01000953G0730 188 AAVPKRILELMNVEKLTSGNVASHLQ 213
                      69************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-8188212IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-9188214IPR006447Myb domain, plants
SMARTSM0032017201238IPR001680WD40 repeat
PROSITE profilePS5029411.287208289IPR017986WD40-repeat-containing domain
PROSITE profilePS500829.974208247IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.5E-21213311IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509787.06E-21215316IPR017986WD40-repeat-containing domain
SMARTSM003201.5E-4241280IPR001680WD40 repeat
PROSITE profilePS500829.907247281IPR001680WD40 repeat
SuperFamilySSF560421.64E-22301423IPR010918AIR synthase-related protein, C-terminal domain
PfamPF027696.8E-11309422IPR010918AIR synthase-related protein, C-terminal domain
Gene3DG3DSA:3.90.650.102.7E-24312422IPR010918AIR synthase-related protein, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MENVVFYRGA NREGPPSATT STTGQSYLDA MWMEERKGSM GRGRDQFGGE ISSWSACGSS  60
LSTMTWSASR FLRPSFGTAS IMMDDMDSFK LLELVELKMD LPVITRLLVG LLIKVGGSTR  120
GRNCIVKRKM KVRRTVFKEM MNPQLQRSQE LYGQMNYIGN LLPLSTNMEL IVTTTHLCYV  180
LSRTVDAAAV PKRILELMNV EKLTSGNVAS HLQYLLSSSM DETYLLSSSM DETVRLWHMS  240
SASCLKTFSH SDYVTCIQFN PVHDRYFISD SLNEKVRIWS IPKREIVDWN DLHEMVTAAC  300
YTPDGQVLAI TSKGSINRLS HITGSGVTDN IPRIFPYGLR VKIFMGSWEV PPMFRFENFY  360
GIMGSATYVQ VGKIEDVEIR RTFNMGVGMV LVVSKEASDR ILEDIYGSNH AYRIGEVIQG  420
EGFTTPELIS LHCFEWFEVK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5avm_A2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
5avm_B2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
5avm_C2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
5avm_D2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
5avm_E2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
5avm_F2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
5avm_G2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
5avm_H2e-15316422238329Phosphoribosylformylglycinamidine cyclo-ligase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000953G0730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646398e-94AK364639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027C23.