PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000950G0510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 328aa    MW: 34909.1 Da    PI: 7.3693
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000950G0510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17162216256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  PH01000950G0510 162 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTK 216
                      788899***********************************************98 PP
2HD-ZIP_I/II127.75e-41162252192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++K +lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  PH01000950G0510 162 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 252
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-18148219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-18148212IPR009057Homeodomain-like
PROSITE profilePS5007117.07158218IPR001356Homeobox domain
SMARTSM003891.9E-15160222IPR001356Homeobox domain
PfamPF000463.3E-15162216IPR001356Homeobox domain
CDDcd000862.92E-17162219No hitNo description
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
SMARTSM003401.4E-24218261IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10218252IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADAGRELVL GLGLGVGMGV RREEERERGR RDQEVAAVRR ELELGGRRCG SSPEPTVRLT  60
LLPLVPSLGL PWPTESRHLV ASTRGFDVNQ APSSGGACAA DEEQEDTAAA GMAVSSSPNN  120
SAGSFPTDFA QGGLGASDVA PGAGADRSCS RASDEDDGGS ARKKLRLSKE QSAFLEESFK  180
EHSTLNPKQK LALARQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR  240
LQKELAELRA LKTVHPFYMH LPATTLSMCP SCERVASNSA PASATAPAAP TGGDIAAAAA  300
EHIPSSFAAL FSSPRSFPLA AQPPASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210218RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000950G0510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364470.0BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269110.0KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696371.11e-144PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-141HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A3B6LN471e-151A0A3B6LN47_WHEAT; Uncharacterized protein
STRINGTraes_5BL_4A3874701.11e-152(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-78homeobox from Arabidopsis thaliana