PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000949G0120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Dof | ||||||||
Protein Properties | Length: 199aa MW: 20938.5 Da PI: 8.229 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 106.1 | 1.9e-33 | 75 | 123 | 3 | 51 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPv 51 e lkcprC+stntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvP PH01000949G0120 75 EPGLKCPRCESTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPA 123 56789*******************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-30 | 60 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-29 | 78 | 124 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.714 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MIFPPAFLDS SSWNDNQQHV HHQVAASGGG DGNHELLQPS IMPGALPEGG GGPGGPAKPM 60 SMAERARMAR IPLPEPGLKC PRCESTNTKF CYFNNYSLSQ PRHFCRACRR YWTRGGALRN 120 VPAAMAPAPA MAMPGMFHLG LDGDGRGGGG VNGEDGGELH VMPSKREGYP RGGMYGDHLT 180 GYPSYSNTTT GFSGAFGG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000949G0120 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079356 | 5e-84 | AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence. | |||
GenBank | AK108933 | 5e-84 | AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence. | |||
GenBank | AP014961 | 5e-84 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 5e-84 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | GQ183552 | 5e-84 | GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140917.1 | 4e-61 | uncharacterized LOC100272994 | ||||
Swissprot | Q9M2U1 | 1e-36 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | B4FS72 | 1e-59 | B4FS72_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DG17 | 1e-59 | K0DG17_MAIZE; DOF5 C2C2-DOF type transcription factor (Fragment) | ||||
STRING | GRMZM5G880268_P01 | 2e-60 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 7e-35 | Dof family protein |