PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000948G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 470aa    MW: 51142 Da    PI: 7.8824
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000948G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-10112155155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr      d      + k+++lg f+ta+ Aa+a+++a+ k++g
  PH01000948G0320 112 SQYRGVTFYRRTGR------D------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 155
                      78************......5......56************************997 PP
2AP237.55.7e-12198248155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV+ +k  g+W+A+       g    +k+++lg ++t+ eAaka+++a  k +g
  PH01000948G0320 198 SRFRGVTLHK-CGKWEAR---T---GqlmGKKYVYLGLYDTEMEAAKAYDKAVIKCYG 248
                      789*******.7******...7...556335**********77*********988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.103103163IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-10112164IPR016177DNA-binding domain
SMARTSM003809.3E-22113169IPR001471AP2/ERF domain
PfamPF008471.4E-4113155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-11127163IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16198257IPR016177DNA-binding domain
PfamPF008471.9E-7198246IPR001471AP2/ERF domain
CDDcd000184.82E-21198258No hitNo description
SMARTSM003808.6E-30199262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-14199256IPR001471AP2/ERF domain
PROSITE profilePS5103214.355199256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAATKRAFYG AGGIALAMHR DDAVVDEAEL GGQTEEGSRR IFGLPVPAGG PATRPIVTQQ  60
FFPTTVVAAT VVAPAATQQQ AMEQCHLAAT VADQWARPPS RKSRRGPRSR SSQYRGVTFY  120
RRTGRDCGKQ VYLGGFDTAQ AAARAYDQAA IKFRGVDADI NFTLDDYKED INKMNSFSKE  180
EFIQVLRRQG AGFVRGSSRF RGVTLHKCGK WEARTGQLMG KKYVYLGLYD TEMEAAKAYD  240
KAVIKCYGKE AVTNFDPQTY ENELSLQPWD SELDLELSLG CSGGERAGDP TTVSDDIFHG  300
APSNQRTRLT FKMPEEEEDT RACYPPRSNW TRPSSTPIWP NDAFRRPDDD HHPGSRNMLH  360
MLQMDQVSSS GVWEGATAAG AGVSAAELHM RPRPGWPNGG NNWRPYAAQS RLPVPDDDAY  420
TAAASSGFPT GARQLLGAAA AGGYGVKAQQ LNHHPAPNSS GTLALISDH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000948G0320
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429571e-174AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.11e-175ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH01e-176AP24_ORYSJ; APETALA2-like protein 4
TrEMBLJ3MG520.0J3MG52_ORYBR; Uncharacterized protein
STRINGOB06G29960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-74AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]