PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000941G0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 31918.1 Da PI: 6.2386 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.4 | 5.3e-18 | 22 | 71 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq PH01000941G0090 22 RSKHSATEQRRRSKINDRFQVLRELLPHS----DQKRDKATFLLEVIEYIRFLQ 71 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-24 | 18 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-19 | 19 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.831 | 20 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-15 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.19E-16 | 22 | 75 | No hit | No description |
SMART | SM00353 | 4.6E-13 | 26 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVDGKGGSCS GSGTDQQPNT PRSKHSATEQ RRRSKINDRF QVLRELLPHS DQKRDKATFL 60 LEVIEYIRFL QEKEQKYEAS FPEWNQENAK ILPWSNLYFR SFWKNAQSKG QIPEDALPDP 120 SQLIRNGSSP GLNFTGKLDD NHTVVASAAA SGAQDQVETD HIANNVTSQS QPQWAGSSGV 180 DDCAVNSDTL NDQQLTIDEG TICLSSQYSQ ELLNTLTHAL QSSGVDLSQA SISVQINLGK 240 RAVKRPAAGA SSSSKELIDP ASNNETVGHL LTTLGGGAEE HPHATKRHKP GNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000941G0090 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095832 | 0.0 | FP095832.1 Phyllostachys edulis cDNA clone: bphyst038o06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801931.1 | 1e-168 | transcription factor BIM2-like isoform X11 | ||||
Swissprot | Q9CAA4 | 8e-62 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A446UCS3 | 1e-175 | A0A446UCS3_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_AAC9C7238.2 | 1e-171 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-64 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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