PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000937G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 291aa    MW: 31325.1 Da    PI: 9.2201
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000937G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.32.3e-2836128898
           DUF573   8 seeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                      s eDei++L++li+++ak+g+   +++d+ +++++++++ ++k+s++ql++K+rrLK K++  v+++k+g++p++ + hd++++elskk+Wgs
  PH01000937G0050  36 SPEDEITILRALISYRAKKGVlpASTQDTGKLHSQIRGQFNVKASTTQLSDKVRRLKIKYNLLVTRTKNGRDPDLPTVHDRDVYELSKKVWGS 128
                      689******************888889****************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.9E-2636127IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAPAASPPAQ VPPSGAPSAP TAHPPCTPGS SRGGRSPEDE ITILRALISY RAKKGVLPAS  60
TQDTGKLHSQ IRGQFNVKAS TTQLSDKVRR LKIKYNLLVT RTKNGRDPDL PTVHDRDVYE  120
LSKKVWGSKS VGAGSGGGSG GGRVYENAEV AESGELHESG ESDEDMEGAW DDPDYSRNRR  180
LKAIAVANGN GNAIAIGGRT GHGNNGGKGD VEKGKDMYPY LWEAVEELSK EHPSGTAFRK  240
AFGVLEGSRA WVMEEKLQKF RLSEIRQQLR RMDLMKETVK MVLDALEGTD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000937G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695633.11e-138PREDICTED: mediator-associated protein 1-like, partial
TrEMBLJ3MTP71e-138J3MTP7_ORYBR; Uncharacterized protein
STRINGOB08G24780.11e-138(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-08DNA-binding storekeeper protein-related transcriptional regulator