PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000933G0470
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 620aa    MW: 67432.4 Da    PI: 6.564
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000933G0470genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like642.8e-20196241551
          G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      +W+ eLHe+F+eave LGG+  AtPk+il+ m+vk+Lt ++++SHLQ
  PH01000933G0470 196 KWSIELHEKFLEAVEGLGGKS-ATPKRILQRMNVKDLTSKQIASHLQ 241
                      8****************8865.************************* PP
2Response_reg35.84.3e-1361171104
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.....HHHHESEEEEESSCTT.SEHHHHHHHHHHHT...TTSEEEEEESTTTHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell.....kekdpDlillDiempg.mdGlellkeireee...pklpiivvtahgeeed 85 
                      +l+ dD+p+  +++ ++l k ++ +v  ++++e+al+ l     ke++ Dl+l  + +++   G  + + +  +     ++p i + a+g+ee 
  PH01000933G0470   6 ILVLDDNPTSVSIISKILAKFNF-KVLPFQTAEAALDSLrrgvaKEEELDLVLAEVHLSNkAMGTLANSDLFHHIlneLQVPLITMCAYGDEEA 98 
                      7999*******************.***************666666666*******98888745544444442222234689999999******* PP

                      HHHHHHTTESEEEESS--H CS
     Response_reg  86 alealkaGakdflsKpfdp 104
                      + e++ +Ga+ ++ Kp + 
  PH01000933G0470  99 VSECMALGASFHVLKPLNT 117
                      ****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.25E-163133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.9E-163133No hitNo description
SMARTSM004480.00834127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.7295128IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-96117IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.66E-97116No hitNo description
SuperFamilySSF466893.05E-12191242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-18195241IPR009057Homeodomain-like
PfamPF002491.7E-7196243IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.3E-18196242IPR006447Myb domain, plants
PROSITE profilePS5129410.21196248IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MYNLSILVLD DNPTSVSIIS KILAKFNFKV LPFQTAEAAL DSLRRGVAKE EELDLVLAEV  60
HLSNKAMGTL ANSDLFHHIL NELQVPLITM CAYGDEEAVS ECMALGASFH VLKPLNTGTF  120
HILKQRALEH RSRRAIPEGP SILNKTKRRM DSSSTKKPKS MFIPEGSNVH KSESEKDEEP  180
DVWKACGYSM KPGWFKWSIE LHEKFLEAVE GLGGKSATPK RILQRMNVKD LTSKQIASHL  240
QDLNALRSLP MEPLAVVTAS NCNISGHGSR QLIPIVTLIP KLQFSVTTSA PSLSLVLKPG  300
SRQFAAAKHR YRLLKHKAKQ GGQDQWNASM KPVSELIISA HNAATSKSNN QPATTQTPIT  360
PIVASAIREK YPIRLWTPME ESSAEAAASK THTCTSAIYG DDTKSAWDKY EKGLQKRLSL  420
SSKWQLLSAK SKAVSKDKGI ANKAPAGEKG YGAPASAPLE SSGSSSLLTS LLDQVGENRH  480
TKAAGSNGDL ENITLHEDIM NKEYTAAMSA DGLLDLGSSA LLDDTNKSCT AEMELSTFWV  540
SQLEGSQEHQ DLVPDDLLQV DDAWNDALQS VSLTNMDAPM AQEAANGDAP AYDPVEQFAE  600
GNAFWNWGPQ VGGDYGMLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000933G0470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813472.12e-84two-component response regulator ARR2-like isoform X1
STRINGPavir.Db00207.1.p1e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-23response regulator 2