PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000931G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 91aa    MW: 9928.61 Da    PI: 6.9699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000931G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08451347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+   +l+ +a + + ++   +W  +ar +g g+++ ++k ++  +
  PH01000931G0030  4 SWTAKQNKLFERALATYDKDtpdRWQNVARAVGGGKSADEVKRHYEEL 51
                     7********************************************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.7E-8154IPR001005SANT/Myb domain
PROSITE profilePS5129312.134156IPR017884SANT domain
SuperFamilySSF466892.69E-12359IPR009057Homeodomain-like
CDDcd001674.04E-5452No hitNo description
PfamPF002491.6E-6451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.150.605.6E-42663IPR001606ARID DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSSWTAKQN KLFERALATY DKDTPDRWQN VARAVGGGKS ADEVKRHYEE LLKDLQHIES  60
AGGHQGSHYS SSSASSSNSN SWGSANEDQR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-224601065RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000931G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647765.12e-42PREDICTED: protein RADIALIS-like 3
RefseqXP_015689596.12e-42PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN03e-25RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D9VK053e-42A0A0D9VK05_9ORYZ; Uncharacterized protein
STRINGOB02G36700.17e-42(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-25RAD-like 6