PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000930G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 379aa    MW: 40889.6 Da    PI: 7.9048
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000930G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.41.8e-29226281156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r+ W+ eLH++Fv ++++LGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  PH01000930G0300 226 KARRFWSAELHRQFVAVLQRLGGAQVATPKQIKELMNVDGLTNDEVKSHLQKYRLH 281
                      6899**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.821223283IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-26223284IPR009057Homeodomain-like
SuperFamilySSF466893.23E-16224284IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24226281IPR006447Myb domain, plants
PfamPF002495.7E-6231279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGTSTSHSEA IPGLDLRLLV AKTIGNLLKE EGVASGSSEQ EKAERFGECI RRLETEKAKM  60
EAFRKELPMS VHLVGDVIGW LEDEADQRRM PTRELFAPAL AKRKVEDKAG AVMKPEVDAN  120
DKTDWMSSAQ LWSCGNHSDT TDTSRAGSKG RGVKKPSHKV SSALPGSPTL ATASEKAGNA  180
TPPVLAELSL SSPAIDRACP VSPNANANCN AIDQARAQGQ PAAQRKARRF WSAELHRQFV  240
AVLQRLGGAQ VATPKQIKEL MNVDGLTNDE VKSHLQKYRL HTRRAAGRDQ PAIGLWPQHE  300
QRCGASPDNT LHSSVSPEVH LQTSGSSQSR PGSPEARLQL SESSGRVVSV TAGDSYEADE  360
EDRRSENCSV EAQHRTPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000930G0300
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151221.13e-89myb family transcription factor EFM-like
TrEMBLA0A3B6MLQ62e-88A0A3B6MLQ6_WHEAT; Uncharacterized protein
STRINGTraes_5BS_C9EA93E10.18e-87(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-34G2-like family protein