PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000928G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 580aa    MW: 63412.7 Da    PI: 6.7821
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000928G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-211671156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++ +++t++q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  PH01000928G0560 16 KKRYHRHTPHQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 71
                     678899***********************************************998 PP
2START156.62e-491433642206
                      HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      +a +a++el+++a+a+e +Wvk    e +n d++ ++f++ ++       ++e +r+sg+v+m +  lv  ++d++ +W+e ++    ka t++
  PH01000928G0560 143 MATRAMDELIRLAQAGEHLWVKTGgrEVLNVDTYDSIFAKPGSsfrgpdVHVEGSRDSGLVFMSAIGLVDMFMDSS-KWTEFFPtvvsKAGTID 235
                      5789*******************999999*********8877799*******************************.***************** PP

                      EECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
            START  84 vissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      v+ +g     + l+lm  el ++sp+vp R+f f+Ry+rq ++g w+i+d+Svd +++        R+ +lpSg+li ++sng+skvtwveh++
  PH01000928G0560 236 VLVNGmagrsESLVLMCEELHVMSPVVPtREFCFLRYCRQIEQGLWAIADISVDLQRDARF-GAPSRSCRLPSGCLIADMSNGYSKVTWVEHME 328
                      **********************************************************985.44457779************************ PP

                      --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      ++ ++p h l+r ++ sg+a+ga +w+a+lqr ce+
  PH01000928G0560 329 MENKIPiHLLYRDIILSGAAFGAHRWLAALQRACER 364
                      **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-22667IPR009057Homeodomain-like
SuperFamilySSF466891.5E-20871IPR009057Homeodomain-like
PROSITE profilePS5007117.8311373IPR001356Homeobox domain
SMARTSM003891.9E-201477IPR001356Homeobox domain
CDDcd000864.85E-201571No hitNo description
PfamPF000464.0E-191671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084846.509133367IPR002913START domain
SuperFamilySSF559614.53E-33134366No hitNo description
CDDcd088751.03E-105137363No hitNo description
SMARTSM002348.0E-39142364IPR002913START domain
PfamPF018521.5E-41143364IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-5259340IPR023393START-like domain
SuperFamilySSF559616.96E-9382571No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDFGDDLEGS DGQRRKKRYH RHTPHQIQQL EAMFKECPHP DENQRMQLSR ELGLEPRQIK  60
FWFQNRRTQM KLDRVSSLTS KYLGRPITQL PPVQPLSMSS LDLSVGRLGP SLDLDLLSGS  120
SSGLAFQLPT PVSEMERPMM AEMATRAMDE LIRLAQAGEH LWVKTGGREV LNVDTYDSIF  180
AKPGSSFRGP DVHVEGSRDS GLVFMSAIGL VDMFMDSSKW TEFFPTVVSK AGTIDVLVNG  240
MAGRSESLVL MCEELHVMSP VVPTREFCFL RYCRQIEQGL WAIADISVDL QRDARFGAPS  300
RSCRLPSGCL IADMSNGYSK VTWVEHMEME NKIPIHLLYR DIILSGAAFG AHRWLAALQR  360
ACERYACLVT AGTPHRDIAG VTPEGKRSMM KLSQRMLSSF CVSLSASQLH RWTMLSGAND  420
VGVRVMWDVL SHGNPVQEVS RIPNGSHPGN CISLLRGLNA SQNSMLILQE SCTDASGSLV  480
VYAPIDLPAA NVVMSGEDPS TIPLLPSGFT ILPDGRPDAS TSANPLGSPP AGSLVTVAFQ  540
ILVSSLPSSK LNAESVATVN SLISTTVEQI KAALNCASH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000928G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7285230.0KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142912.20.0uncharacterized protein LOC100275344
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLN1R4W90.0N1R4W9_AEGTA; Homeobox-leucine zipper protein ROC8
STRINGEMT337840.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11