PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000912G0430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 27623 Da PI: 5.9097 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +lv ++++G +W++ ++ g+ R++k+c++rw +yl PH01000912G0430 14 RGPWTAEEDRILVAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++ +lG++ W+ Ia++++ gRt++++k+ w+++l PH01000912G0430 67 RGNFTREEEDAIIHLHDLLGNR-WSEIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.051 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.75E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.246 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.98E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGRAPCCEKM GLKRGPWTAE EDRILVAHIE RHGHSNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TREEEDAIIH LHDLLGNRWS EIAARLPGRT DNEIKNVWHT HLKKRLEPKP 120 SGQAQGTISA PKRKAKKPEA MSALDDPTTV PVLPEQSLST SATTDYSMAS SFENADSFTS 180 EEDFQIDDSF WSETLAITVD SSGSGMESGD VPFGTDCASP PSSSNDDMDF WLRLFMQAGD 240 MQCLSQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 117 | 5 | 109 | B-MYB |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000912G0430 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK112056 | 1e-142 | AK112056.1 Oryza sativa Japonica Group cDNA clone:001-110-C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575391.1 | 1e-134 | transcription factor MYB30 | ||||
Swissprot | Q6K1S6 | 1e-123 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A3B6PM53 | 1e-133 | A0A3B6PM53_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WER0 | 1e-133 | A0A446WER0_TRITD; Uncharacterized protein | ||||
STRING | Traes_6DL_991931CF9.2 | 1e-134 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-82 | myb domain protein 14 |
Publications ? help Back to Top | |||
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