PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000907G0490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 230aa    MW: 26248.9 Da    PI: 9.7574
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000907G0490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.63.1e-131503886
         trihelix 38 mrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                     m+++gf +sp+qC++k+++lnkryk++ +  +++ +++++++++++d ++
  PH01000907G0490  1 MMDKGFMVSPQQCEDKFNDLNKRYKRVVDLLGRGkACKVVENHALLDAMD 50
                     899*****************************9967************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-9146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMDKGFMVSP QQCEDKFNDL NKRYKRVVDL LGRGKACKVV ENHALLDAMD ELTPKAKDEA  60
RKLLSSKHLF FREMMTAAGE DGPPAVQQLQ SELAAWAAGG DPQQVRQWVR RRAVELEEQQ  120
VAYECRAYQL ERQRLKWERF RANKEREMER ARLRNDRLGI DGRRMLLLLR QKDLDFDIAE  180
ANSSSVEHLP AAPLASAPAP PPPATPTRKA KQHHASWLHA NLSFPSNQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000907G0490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1101941e-117AB110194.1 Oryza sativa Japonica Group mRNA for hypothetical protein, partial cds, clone: 22C4AG010.
GenBankAK2890281e-117AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034141e-117AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039211e-117AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149571e-117AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880854.12e-56sarcoplasmic reticulum histidine-rich calcium-binding protein
TrEMBLM0RIG54e-61M0RIG5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P15390_0017e-62(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-35sequence-specific DNA binding transcription factors