PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000901G0540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 204aa MW: 21695.8 Da PI: 7.0839 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.5 | 9.2e-36 | 47 | 105 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++++cprC stntkfCyynnys+sqPr+fC+aCrryWtkGG+lr+vPvGg++r++ + PH01000901G0540 47 QQQQIECPRCGSTNTKFCYYNNYSTSQPRHFCRACRRYWTKGGTLRDVPVGGASRRSGN 105 7899**************************************************99754 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.3E-32 | 49 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.717 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-23 | 51 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 53 | 89 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MAPAASLLSA NSVAAASKRP AASDAEPLDS SSPPQGGDQE AARKDQQQQQ IECPRCGSTN 60 TKFCYYNNYS TSQPRHFCRA CRRYWTKGGT LRDVPVGGAS RRSGNKRRRV SAEPSSASPP 120 PTYARAEDAY PDLSTFPFLS DGIFLPQFDL GAAPAAFSWP SAAPDFYDGL APWDDGTRGV 180 GVTGAWDNFT DIVGLSWPPP AGN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 105 | 109 | KRRRV |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000901G0540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP095283 | 0.0 | FP095283.1 Phyllostachys edulis cDNA clone: bphyst028i11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824347.1 | 7e-74 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A0A9K558 | 1e-90 | A0A0A9K558_ARUDO; Uncharacterized protein | ||||
STRING | OPUNC04G27290.1 | 6e-75 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14047 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66940.1 | 9e-29 | Dof family protein |