PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000891G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 317aa    MW: 34680.1 Da    PI: 6.52
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000891G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50101341128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd+elv++yL++k+ g ++ +  vi+e+d+yk++Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s
  PH01000891G0360  10 LPPGFRFHPTDDELVMHYLCRKCGGLSVAA-PVIAEIDLYKFDPWELPEKAMGGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGS 102
                      79*************************988.89***************8888999*************************************99 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + v +kk Lvfy g++pkg+kt+W+mheyrl
  PH01000891G0360 103 --PRPVAIKKALVFYAGKSPKGVKTNWIMHEYRL 134
                      ..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-606164IPR003441NAC domain
PROSITE profilePS5100558.6310164IPR003441NAC domain
PfamPF023659.0E-2611134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDCGGGALQL PPGFRFHPTD DELVMHYLCR KCGGLSVAAP VIAEIDLYKF DPWELPEKAM  60
GGEKEWYFFS PRDRKYPNGS RPNRAAGTGY WKATGADKPV GSPRPVAIKK ALVFYAGKSP  120
KGVKTNWIMH EYRLADVDRS AAARKKSKNA LRLDDWVLCR IYNKKGVIER YDTVPTGDVK  180
PAVAAAAKNP RPGPEMKLEL SDYGFYGPPS PPPTSATEML CFDRSGSADR DSMPRLHTDS  240
SCSEYVLSPS PDFPSDGDRD LDYAESQPTG GGWAGGDWGA GDGFVIDGSL FEPPSPGVFA  300
RDAAVFGDMF TYLQKPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-78817013174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000891G0360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0952090.0FP095209.1 Phyllostachys edulis cDNA clone: bphylf057o13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163238.11e-170NAC domain-containing protein 71-like
SwissprotQ53NF71e-167NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A3B6JFA51e-169A0A3B6JFA5_WHEAT; Uncharacterized protein
TrEMBLA0A453HIW21e-169A0A453HIW2_AEGTS; Uncharacterized protein
STRINGTraes_4DS_DA83A5E27.11e-170(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-103NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]