PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000891G0190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 425aa MW: 47504.4 Da PI: 10.1529 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.1 | 1.2e-38 | 10 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd+e +++yL++k+ g +l + +i+e+d++kv+Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ tg dk+v PH01000891G0190 10 LPPGFRFHPTDDEPMMHYLCRKCGGLSLAA-PAIAEIDLHKVNPWELPEKTMGGEKEWYFFSPRDRKYSNGSRPNRAAG------TGADKPVGW 96 79*************************999.78***************8888999*********************977......888888887 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + v +kk Lvfy ++ +kg+kt+W+mheyrl PH01000891G0190 97 --PRPVAIKKALVFYAKKPSKGVKTNWIMHEYRL 128 ..667899************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-44 | 6 | 130 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.205 | 10 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-18 | 11 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MDCGGGALQL PPGFRFHPTD DEPMMHYLCR KCGGLSLAAP AIAEIDLHKV NPWELPEKTM 60 GGEKEWYFFS PRDRKYSNGS RPNRAAGTGA DKPVGWPRPV AIKKALVFYA KKPSKGVKTN 120 WIMHEYRLTD VQRSSPRTRS GHFTDNIDIY NEKKIQRKSF LKWQAIALAR SICQIHEDLD 180 SGNPSLKLLY VTPELVATSG FKAKLTKLYN RGLLGLVAID ELDNCALCRS TTRRYDTVPT 240 GDVKPAVAAA AAQNPRGVGH RGESWKESFA RFQSHPFGPG QTVEIEQRQS IVRIEKAEDR 300 GRLARGSGKW QPKSPNSCTS SSQSSSPRRR LRTTRSSEAM EAEGATGVGQ EREIGSFNWA 360 GFFSNRYILL QILLYVYLFY TKLPGLDELG PLLAWLLLLL PMCALNLIGT HKLKELAARR 420 QRQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-52 | 8 | 128 | 13 | 140 | Stress-induced transcription factor NAC1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 326 | 332 | PRRRLRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000891G0190 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094766 | 1e-174 | FP094766.1 Phyllostachys edulis cDNA clone: bphyem209f22, full insert sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 7e-66 | NAC family protein |