PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000891G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 425aa    MW: 47504.4 Da    PI: 10.1529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000891G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.11.2e-38101281128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd+e +++yL++k+ g +l +  +i+e+d++kv+Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+       tg dk+v  
  PH01000891G0190  10 LPPGFRFHPTDDEPMMHYLCRKCGGLSLAA-PAIAEIDLHKVNPWELPEKTMGGEKEWYFFSPRDRKYSNGSRPNRAAG------TGADKPVGW 96 
                      79*************************999.78***************8888999*********************977......888888887 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + v +kk Lvfy ++ +kg+kt+W+mheyrl
  PH01000891G0190  97 --PRPVAIKKALVFYAKKPSKGVKTNWIMHEYRL 128
                      ..667899************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-446130IPR003441NAC domain
PROSITE profilePS5100537.20510158IPR003441NAC domain
PfamPF023651.7E-1811128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDCGGGALQL PPGFRFHPTD DEPMMHYLCR KCGGLSLAAP AIAEIDLHKV NPWELPEKTM  60
GGEKEWYFFS PRDRKYSNGS RPNRAAGTGA DKPVGWPRPV AIKKALVFYA KKPSKGVKTN  120
WIMHEYRLTD VQRSSPRTRS GHFTDNIDIY NEKKIQRKSF LKWQAIALAR SICQIHEDLD  180
SGNPSLKLLY VTPELVATSG FKAKLTKLYN RGLLGLVAID ELDNCALCRS TTRRYDTVPT  240
GDVKPAVAAA AAQNPRGVGH RGESWKESFA RFQSHPFGPG QTVEIEQRQS IVRIEKAEDR  300
GRLARGSGKW QPKSPNSCTS SSQSSSPRRR LRTTRSSEAM EAEGATGVGQ EREIGSFNWA  360
GFFSNRYILL QILLYVYLFY TKLPGLDELG PLLAWLLLLL PMCALNLIGT HKLKELAARR  420
QRQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-52812813140Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326332PRRRLRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000891G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947661e-174FP094766.1 Phyllostachys edulis cDNA clone: bphyem209f22, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.17e-66NAC family protein