PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000890G0360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 20993.9 Da PI: 11.456 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7.1e-20 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp+ r +r++lg+f+tae Aa+a++aa++ ++g PH01000890G0360 19 PRFRGVRKRP-WGRYAAEIRDPT----RkARVWLGTFDTAEAAARAYDAAALHFRG 69 689*******.**********84....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.7E-14 | 19 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-17 | 19 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-32 | 20 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 20 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.553 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-36 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAPKNAPSVA AAVADGMEPR FRGVRKRPWG RYAAEIRDPT RKARVWLGTF DTAEAAARAY 60 DAAALHFRGP KAKTNFPVAY AHVPPPKALA TAVSPSSSTV ESSSPDSPAT APPTAALVAA 120 PSLDLSLGMP VAAQPFLFPD PRFAVTVAVA APVPHRPAVA AGKKALARVE EQSDTGSSSS 180 VVDASPAVGA RRPRRLRSGA SAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 20 | 80 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000890G0360 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093387 | 0.0 | FP093387.1 Phyllostachys edulis cDNA clone: bphylf043h08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976762.1 | 6e-64 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A0E0KV08 | 2e-67 | A0A0E0KV08_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G22340.1 | 4e-68 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 4e-23 | erf domain protein 9 |