PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000860G0710
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 353aa    MW: 38216 Da    PI: 6.5012
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000860G0710genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.18e-802335132374
             GRAS  32 spdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGl 123
                       p g+p+ R a+y++eAL   la+      +  +++ ts+ +++ +laa+k fs++sP+++f+++ta qa+l++++g+  +++H+iDf+++ G+
  PH01000860G0710  23 PPLGKPFLRSASYLKEALLLALAD-----GHYGASRLTSPFDVALKLAAYKSFSDLSPVMQFANFTATQALLDEIAGSaaSCIHVIDFNLGVGG 111
                      67899******************9.....44456666666779**********************************98899************ PP

             GRAS 124 QWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhr 212
                      QW+++lq+La R     +  p l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++   +l++ ++ +L + + +E++aV+l +    
  PH01000860G0710 112 QWASFLQELAHRHgsgcATMPLLKLTAFVSSASHHPLELHLTQDNLSQFAADLGIPFEFNAV---SLDTGSPADLIFPTgDEVVAVSLPVGCSA 202
                      *************6555559*****************************************8...999*******999999********97776 PP

             GRAS 213 lldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                            +     + +L+lvk+l+Pk+vv ++   d+ + +F ++fl++++ ++ l+dsl+a  + +++ + k+Er+l++++i+++v  + ++  
  PH01000860G0710 203 RA---PP----LPVILRLVKQLNPKIVVAMDYGGDRADLPFWQHFLNCFQSCVFLLDSLDAA-GIDADSACKIERFLIQPRIEDAVLGRRKA-- 286
                      65...44....556*********************************************888.7899*******************988877.. PP

             GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++++Wr+ + + GF+pvpls+ a++qa++ll++v+++g++ve+++  l+l+W++ +Lvs+SaWr
  PH01000860G0710 287 ---DKAMSWRNVFAATGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKREVGLTLYWQRGELVSISAWR 351
                      ...889*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.4641331IPR005202Transcription factor GRAS
PfamPF035142.8E-7723351IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTSLPHEFAA EAICNGPRPQ QLPPLGKPFL RSASYLKEAL LLALADGHYG ASRLTSPFDV  60
ALKLAAYKSF SDLSPVMQFA NFTATQALLD EIAGSAASCI HVIDFNLGVG GQWASFLQEL  120
AHRHGSGCAT MPLLKLTAFV SSASHHPLEL HLTQDNLSQF AADLGIPFEF NAVSLDTGSP  180
ADLIFPTGDE VVAVSLPVGC SARAPPLPVI LRLVKQLNPK IVVAMDYGGD RADLPFWQHF  240
LNCFQSCVFL LDSLDAAGID ADSACKIERF LIQPRIEDAV LGRRKADKAM SWRNVFAATG  300
FTPVPLSNLA EAQADCLLKR VQVRGFHVEK REVGLTLYWQ RGELVSISAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-282635137375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000860G0710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570043.10.0scarecrow-like protein 27
TrEMBLM8BWU00.0M8BWU0_AEGTA; Uncharacterized protein
STRINGBRADI3G50930.10.0(Brachypodium distachyon)
STRINGEMT262580.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-91GRAS family protein