PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000856G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 396aa    MW: 42486.5 Da    PI: 6.9489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000856G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92e-49431682128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++   +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +  +
  PH01000856G0430  43 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRFDPWELPAMSVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGE 135
                      79***************************.89***************7666799**************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++glkktLvfy+g+apkg++++W+m+eyrl
  PH01000856G0430 136 NNRAIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 168
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5742191IPR003441NAC domain
PROSITE profilePS5100555.01242191IPR003441NAC domain
PfamPF023651.0E-2444168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSRDVDDGHG AGGVSAAGGG GAGGKAVAAG GEAADSHEND LVMPGFRFHP TEEELIEFYL  60
RRKVEGKRFN VELITFLDLY RFDPWELPAM SVIGEKEWFF YVPRDRKYRN GDRPNRVTAS  120
GYWKATGADR MIRGENNRAI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP PATDADLFYK  180
SEISLCRVYK RSGIDDGNGQ PSSSNVQASS ARSAPSHTGA PTDRYGSSPS STQLSPTQQP  240
SFHLLGQTEC SSASMPAIMD QATERNAPQL QPPPPPSPSP CSYASVMSST AAVAPTESAT  300
VLASTYSLLN MAGAPMGSSS SPVDELSTLV GHCQTYANHP AARSHFLPLP SPQPMPQMTP  360
LGALPMSPAT VSDKLWDWNP VPDTSARDYT SSGFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-554419219166NO APICAL MERISTEM PROTEIN
1ut4_B5e-554419219166NO APICAL MERISTEM PROTEIN
1ut7_A5e-554419219166NO APICAL MERISTEM PROTEIN
1ut7_B5e-554419219166NO APICAL MERISTEM PROTEIN
4dul_A5e-554419219166NAC domain-containing protein 19
4dul_B5e-554419219166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000856G0430
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604781e-177BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds.
GenBankHQ8587621e-177HQ858762.1 Zea mays clone UT1609 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183242.11e-166transcription factor JUNGBRUNNEN 1-like
SwissprotQ9ZVP81e-96NAC35_ARATH; NAC domain-containing protein 35
TrEMBLM0YID10.0M0YID1_HORVV; Uncharacterized protein
STRINGMLOC_69621.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.22e-95NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]