PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000843G0480
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 537aa    MW: 58023 Da    PI: 6.9537
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000843G0480genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.5e-31121174255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH +Fv+ave+LGG+e+AtPk++l++m++ gL+++hvkSHLQ+YR+
  PH01000843G0480 121 PRLRWTPDLHMAFVHAVERLGGQERATPKQVLQMMNMRGLSIAHVKSHLQMYRS 174
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-28117175IPR009057Homeodomain-like
PROSITE profilePS5129411.79117177IPR017930Myb domain
SuperFamilySSF466896.63E-14120175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22121176IPR006447Myb domain, plants
PfamPF002491.7E-8122173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MEKEKNSREV EGMGEVKEKE VVEILEDDGK RSSDNSVPPA ALDLNESFGE GSEEGEVGDE  60
DEDDGGSTSE VAGRVRSSSN NSSTNDNSES SKGHDMDSSS KAEGSGERVP TVRQYNRSKL  120
PRLRWTPDLH MAFVHAVERL GGQERATPKQ VLQMMNMRGL SIAHVKSHLQ MYRSKKLDHE  180
SSHERAAISS AFSPMDFHMR RGDGRFHDMF LQRAAGSGLS SRLHEKGGFF ASRNAGLPEA  240
SRIYGPLQRQ PPPMQTFDFK NYSSFRNQEW PFNQHAAAAR AGAVNDHGPA KGLIHEMIFR  300
KDGKLASHLF DVRDAIASNR TSTATTSTGA ADHRLDGGKV GSFDWIGSSS RPLSRTMSAA  360
VTTGFALGDH HLPFRWRSAA GSNGYHPNDN ANTSSSDPVV SNEALGTRPE LQKRLEPRAP  420
TKAIDEIRID TAAKRTKAST EANGSTPDLQ LSLSPNVGAD STDRPKKRKN IALSEQEVDS  480
DKLPLSLSLS LRFGHSGDEG GGADAGRLDA ATGSSSKKAA LGLSTLDLTM SIKALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-17122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-17122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-17122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-17122176357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000843G0480
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812252.10.0uncharacterized protein LOC112889712
TrEMBLA0A2T7DXS00.0A0A2T7DXS0_9POAL; Uncharacterized protein
STRINGPavir.Db01175.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-32G2-like family protein