PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000842G0540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 213aa MW: 22503.6 Da PI: 9.354 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.3 | 8.3e-26 | 130 | 174 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrks+e+ PH01000842G0540 130 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKSVEA 174 69****************************************986 PP | |||||||
2 | QLQ | 53.4 | 7.7e-19 | 64 | 100 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k PH01000842G0540 64 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 100 799*********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.5E-6 | 64 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.8E-11 | 65 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.225 | 65 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.724 | 130 | 174 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-21 | 131 | 173 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MAEEKEADSP QPPSKLPRLS CADPNAGAVT MADSSPLVLG LGLGLGGDSC GERGVEAPAA 60 HKASALTFMQ QQELEHQVLI YRYFAAGAPV PVHLVLPIWK SVAASSFGPH RFPSLMGLGS 120 LCFDYRSSME PEPGRCRRTD GKKWRCSRDV VPGHKYCERH VHRGRGRSRK SVEAATTTPA 180 PNGSSSSISA SPRGLGFSPT SVLLAHSAAR AT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000842G0540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP099737 | 0.0 | FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647685.1 | 1e-106 | PREDICTED: growth-regulating factor 10 | ||||
Swissprot | Q6EPP9 | 1e-103 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A0E0K3L7 | 1e-109 | A0A0E0K3L7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G25570.1 | 1e-110 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-38 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|