PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000832G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 651aa    MW: 71413.2 Da    PI: 5.1023
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000832G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.25.7e-48101401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptdeelv +yLk+k++g+ ++    i++vd+  +ePwdLp k  +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ +
  PH01000832G0670  10 LPVGFRFRPTDEELVRHYLKAKIAGRVHPDLLLIPDVDLSICEPWDLPaKsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 103
                      79*************************999888***************6346777888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+  g l+g+kktLvf++grap+g++t W+mheyr 
  PH01000832G0670 104 RSRpAGILIGIKKTLVFHRGRAPRGHRTAWIMHEYRT 140
                      **988999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-545161IPR003441NAC domain
PROSITE profilePS5100554.70510161IPR003441NAC domain
PfamPF023652.3E-2611139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVSSAAAAVL PVGFRFRPTD EELVRHYLKA KIAGRVHPDL LLIPDVDLSI CEPWDLPAKS  60
VIKSDDPEWF FFAPRDRKYP GGHRSNRSTA AGYWKATGKD RLIRSRPAGI LIGIKKTLVF  120
HRGRAPRGHR TAWIMHEYRT TEPQFESGQN GSFVLYRLFN KHEEETPGSN PEGTEQSMSP  180
STSSPCKPQN DGAVEAAIAS MIKDETSPSD LSQLTATKIA TDDADHSMAH LLTTVHDKEQ  240
ATAQEDAFMD VLAQLPDLQP EQRYDGFPNI GSPMRPYTDH PFVGNVGEQD FSVYFDSIFA  300
EQDPQDLLLD PAYGKTDKHP TGNAESNPTA VITSANNSNN KALLEDSWRK SDSDQVLLVQ  360
CADDTDATCC SSGVNILQTD TGDANHETRA QTNMVYSRAA QGSHLYSQYQ LQPAFDPQME  420
SQNSGAFCSA SSWTPYPQHL FSTMAGPSRS GMINSDAFNG QGDWAEAPSM QQFTDPDFID  480
PHQGTAARRI RLVCSVQRAS ASQPVLTLHS ESEDEAGSCY STGSSSNNHN KDYVNAASQT  540
MVGELVHIQG RGDIPTQVGY SVEVPDKLQD LSFSEDILPH NKLPHGANLK QRFKQEFAQT  600
TQSAHEGLLQ NSDRVPGEPT GSSAVQLLWL ALPVMALLLV LVGVWKSLNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-421016415171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000832G0670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641781e-177AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLA0A0D3GBR20.0A0A0D3GBR2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HJI40.0A0A0E0HJI4_ORYNI; Uncharacterized protein
STRINGOBART06G00060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-66NAC transcription factor-like 9