PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000827G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 348aa    MW: 37453.2 Da    PI: 6.8405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000827G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05168187120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C  C+k+F+r  n++ H+
  PH01000827G0180 168 FSCAVCNKTFNRFNNMQMHM 187
                      89*****************9 PP
2zf-C2H211.50.00091251273123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C  C+k+F  + + ++H +++
  PH01000827G0180 251 YACRRCSKRFAVRGDWRTHEKNC 273
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.75E-5163189No hitNo description
Gene3DG3DSA:3.30.160.603.8E-5168187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055168195IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-6237271No hitNo description
Gene3DG3DSA:3.30.160.607.7E-6237271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MHSYSAMQPH PYQHHATAAP PSKHANGVNG NGEEDNQSML LLSLWPPGQH HHEVDAASSA  60
CSPPSISTSM STTHSAAASS WFNQSHYNGG AGGGNDSFLF HEQDPNVTIS LSIAPPCSNA  120
VSCGGGFAAP SVTASALSST AAPGSSQQVP SQYWIPSAAE ILVGSTQFSC AVCNKTFNRF  180
NNMQMHMWGH GSQYRKGSES LRGAITVGAA PPPSLIAEGC RNNIDHPRAR PLKDFRTLQT  240
HYRRKHGARP YACRRCSKRF AVRGDWRTHE KNCGKVWFCV CGSDFKHKRS LKDHVRSFGG  300
GHAPHIIESV TIDDDEEEDD ELAHDHDDGD LLDENGNAGD ASDMVVV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000827G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732991e-125AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172443.11e-158zinc finger protein WIP6-like
SwissprotQ9FX683e-92ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A3B6MPB21e-157A0A3B6MPB2_WHEAT; Uncharacterized protein
STRINGMLOC_54308.11e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-91C2H2-like zinc finger protein