PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000820G0540

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 2071aa MW: 228674 Da PI: 4.949

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000820G0540	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.2	1.7e-32	73	212	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgy 82 lp+G++F+P+d+el+++ L+k+ +++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + + PH01000820G0540 73 LPKGVKFDPSDQELLWHLLAKHGKADAkphpfIHEFIPtVEEDdGICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKRRKINsddlaDVR 165 799**********999998655444445442222222444435******.677888899**************85545555899 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+k+v++ +g++ g+kk++v+y + + k+ kt+Wvmh+y+l PH01000820G0540 166 WHKTGKTKPVMV-DGKHLGCKKIMVLYmsTMKGGKPDKTNWVMHQYHL 212 ********.999*******5534666667*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-37	58	231	IPR003441	NAC domain
PROSITE profile	PS51005	30.849	73	231	IPR003441	NAC domain
Pfam	PF02365	1.8E-13	74	212	IPR003441	NAC domain
Pfam	PF13329	2.2E-6	1306	1413	IPR026885	Autophagy-related protein 2 CAD motif
Pfam	PF09333	2.3E-18	1990	2069	IPR015412	Autophagy-related, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000045	Biological Process	autophagosome assembly
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0010150	Biological Process	leaf senescence
GO:0050832	Biological Process	defense response to fungus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2071 aa Download sequence Send to blast
MAQRTAFTWH LYALVSRWTS WLIDSQRIAS KIKNPSGSLD PSKHKWMSNP TKECPRCNHV 60 IDNSDVVHQW PGLPKGVKFD PSDQELLWHL LAKHGKADAK PHPFIHEFIP TVEEDDGICY 120 THPQKLPGVK QDGSVSHFFH RTFKAYNTGT RKRRKINSDD LADVRWHKTG KTKPVMVDGK 180 HLGCKKIMVL YMSTMKGGKP DKTNWVMHQY HLGTGEDEKD GEYVVSKLFF QQQFKPGEKN 240 AQELTATDAL ETVAAEPDLP DPLLPMEEHV SDSRNQEIRQ NNEHNTDQGN GNSQINMEEK 300 AVEENAVHPS SEKTEDGDNP SSQDPKWWEG ESQFLLDSQQ LAEGLAMCDE FLQSQSQTSC 360 GDEPHTIKPR LAVYAQLPVE DLKKDLEECQ ELDPSDSANP ELENATEFRL SQIIFTCRRL 420 VAHTRGLRKA KIFRWAQELT RGTLLLSDLA LNADCINRKL SGSAIMVKEG SIKSLLVKFP 480 LQEKCCEIIV EDLELVLAPS VVSEVPPVDT ECSVSGSNSD TQTSVKTKRN ESDSNQCSTP 540 ASRDVDEGVK RIASAVKRFL TSFNIRLKNV YVVFDPRTIL DNKASEFNRS LVFRIKETEF 600 GTDLLKVGLQ KLKNFVKFQE AVIEFLKMDD VDALLQNDLD RGTAGISSGH STSAVLTGPI 660 GGFSGELNLS IPWSDGSLKL EKIDADVRVD SLELRLQTST IQWFMDVWDS LQRKPVYEQH 720 CVRNTADMST NTSRSILCSP ASSSLKSGSD SVIAGREDSA QSTFSRSRQD EIQDSFTMAH 780 VIPNWIPELV VHEDQGDPDS DCDESIDQFF ECFEELRNSQ TNLGNSGILD WTCSVFNAIT 840 FASTLASGSD QVPKAEPPIE KTLRASIAEI SVVLLFSDEM DTGNSSVPLS LFNDMRNSEM 900 FSSCLSSAHF EQSMTSPATS SSLNMHHLEA KCHNIDLDLK TYPKNLRFEA SIAHMKLDEY 960 YNTENHDSDP SHLGTIFLNN NFCREVQAAL PQFPLAAQDY WVETSGHSNE LTKVELLKTF 1020 VHLSKKDCGL LNQLLDHILD GLSDGATSSS ENGKDKSMPI NDIAIQTSVI FECSVLDICT 1080 ELDGTVEVGP LLQTELEGSW NCLKLSISKF ALFSFSNVGG VNSTSFLRVN LGEGELWGSI 1140 TGTDDNTCEE SKDFLLVVCK DSASRRGDGE GNNVLSFGTA GCSVTHIRNP KLQENYTSVN 1200 VRSGTIVAPG GRMDWISAIC LLFSSGSHGT EQSNNSSTIN NSQAGEPFSS SSDNSSTINN 1260 SQAGEPVSSS FFLELVDVAV SYEPHFKNSA LSAVAPDCKF FSCLLAASSF KLHNKSASDS 1320 AATDFDVQLR DLGLLICGSF GSKNVTEGYG VDYLRQMGYT KVAQNTCIEA ALRIDTSFWK 1380 LEISESQFDI GTCHDTTYGL VRLCSQLQQL YAPDMREALV HLQSRWNSVQ QANKQNMASD 1440 ASEKSESSID NLMDSGECKS DGLLDDIIEN AFLTDQDCTA YNFWDRNCHN SLSSSEMVDE 1500 FELNTATTEA TDVSVSRISL GSSLVTPEAN TTQIPLKQNS CPEHIDSYYM PEPLHSSSST 1560 ICNEDHQCTS GDDARKTVDC EDGGWYSNMP LTIVENHVSK RNNPQGDHLF QQEGKPAVCS 1620 LESDESCNLK GKIHINDIDV KWRMYAGDDW PLAQKDATSR PCSNGRDRSS SLEFIISGLS 1680 IQFDMYPDGD VSVSKLSISA QDLNLCDESM HAPWKMVLGC YNSKVYPRES CSSAFRLGLE 1740 SVRPEPQAPL EDYRLRLEIL PLQLHLDQGQ LNFLINFFQN DSCNNNPYLP GENEIVDVEG 1800 TTYGSSTIVD EALLPFFQKF DVKPLVLHIN YIPRQFDPIA LSKGNYAELL NILPWKGIDL 1860 KLKHVSAMGV YGWNSICETV AAEWLEDVSK NQVHKLLKGL PPIKSLVAVS SGTKKLVSLP 1920 IKSYKKDRKL LKGMQRGAVA FIRSVSIEAV RLGVHLAAGA HDMLLKTEHA LTAVPPPSAS 1980 SEAKRTKDNI RANQPENAQQ GINQAYESLT DGLGRTASAL IGNPIKVYNR GAGAGSALAT 2040 AIRGAPAAAV APVSASARAV HYALLGLRNR *

Sequence ? help Back to Top

Protein Sequence Length: 2071 aa Download sequence Send to blast

MAQRTAFTWH LYALVSRWTS WLIDSQRIAS KIKNPSGSLD PSKHKWMSNP TKECPRCNHV  60
IDNSDVVHQW PGLPKGVKFD PSDQELLWHL LAKHGKADAK PHPFIHEFIP TVEEDDGICY  120
THPQKLPGVK QDGSVSHFFH RTFKAYNTGT RKRRKINSDD LADVRWHKTG KTKPVMVDGK  180
HLGCKKIMVL YMSTMKGGKP DKTNWVMHQY HLGTGEDEKD GEYVVSKLFF QQQFKPGEKN  240
AQELTATDAL ETVAAEPDLP DPLLPMEEHV SDSRNQEIRQ NNEHNTDQGN GNSQINMEEK  300
AVEENAVHPS SEKTEDGDNP SSQDPKWWEG ESQFLLDSQQ LAEGLAMCDE FLQSQSQTSC  360
GDEPHTIKPR LAVYAQLPVE DLKKDLEECQ ELDPSDSANP ELENATEFRL SQIIFTCRRL  420
VAHTRGLRKA KIFRWAQELT RGTLLLSDLA LNADCINRKL SGSAIMVKEG SIKSLLVKFP  480
LQEKCCEIIV EDLELVLAPS VVSEVPPVDT ECSVSGSNSD TQTSVKTKRN ESDSNQCSTP  540
ASRDVDEGVK RIASAVKRFL TSFNIRLKNV YVVFDPRTIL DNKASEFNRS LVFRIKETEF  600
GTDLLKVGLQ KLKNFVKFQE AVIEFLKMDD VDALLQNDLD RGTAGISSGH STSAVLTGPI  660
GGFSGELNLS IPWSDGSLKL EKIDADVRVD SLELRLQTST IQWFMDVWDS LQRKPVYEQH  720
CVRNTADMST NTSRSILCSP ASSSLKSGSD SVIAGREDSA QSTFSRSRQD EIQDSFTMAH  780
VIPNWIPELV VHEDQGDPDS DCDESIDQFF ECFEELRNSQ TNLGNSGILD WTCSVFNAIT  840
FASTLASGSD QVPKAEPPIE KTLRASIAEI SVVLLFSDEM DTGNSSVPLS LFNDMRNSEM  900
FSSCLSSAHF EQSMTSPATS SSLNMHHLEA KCHNIDLDLK TYPKNLRFEA SIAHMKLDEY  960
YNTENHDSDP SHLGTIFLNN NFCREVQAAL PQFPLAAQDY WVETSGHSNE LTKVELLKTF  1020
VHLSKKDCGL LNQLLDHILD GLSDGATSSS ENGKDKSMPI NDIAIQTSVI FECSVLDICT  1080
ELDGTVEVGP LLQTELEGSW NCLKLSISKF ALFSFSNVGG VNSTSFLRVN LGEGELWGSI  1140
TGTDDNTCEE SKDFLLVVCK DSASRRGDGE GNNVLSFGTA GCSVTHIRNP KLQENYTSVN  1200
VRSGTIVAPG GRMDWISAIC LLFSSGSHGT EQSNNSSTIN NSQAGEPFSS SSDNSSTINN  1260
SQAGEPVSSS FFLELVDVAV SYEPHFKNSA LSAVAPDCKF FSCLLAASSF KLHNKSASDS  1320
AATDFDVQLR DLGLLICGSF GSKNVTEGYG VDYLRQMGYT KVAQNTCIEA ALRIDTSFWK  1380
LEISESQFDI GTCHDTTYGL VRLCSQLQQL YAPDMREALV HLQSRWNSVQ QANKQNMASD  1440
ASEKSESSID NLMDSGECKS DGLLDDIIEN AFLTDQDCTA YNFWDRNCHN SLSSSEMVDE  1500
FELNTATTEA TDVSVSRISL GSSLVTPEAN TTQIPLKQNS CPEHIDSYYM PEPLHSSSST  1560
ICNEDHQCTS GDDARKTVDC EDGGWYSNMP LTIVENHVSK RNNPQGDHLF QQEGKPAVCS  1620
LESDESCNLK GKIHINDIDV KWRMYAGDDW PLAQKDATSR PCSNGRDRSS SLEFIISGLS  1680
IQFDMYPDGD VSVSKLSISA QDLNLCDESM HAPWKMVLGC YNSKVYPRES CSSAFRLGLE  1740
SVRPEPQAPL EDYRLRLEIL PLQLHLDQGQ LNFLINFFQN DSCNNNPYLP GENEIVDVEG  1800
TTYGSSTIVD EALLPFFQKF DVKPLVLHIN YIPRQFDPIA LSKGNYAELL NILPWKGIDL  1860
KLKHVSAMGV YGWNSICETV AAEWLEDVSK NQVHKLLKGL PPIKSLVAVS SGTKKLVSLP  1920
IKSYKKDRKL LKGMQRGAVA FIRSVSIEAV RLGVHLAAGA HDMLLKTEHA LTAVPPPSAS  1980
SEAKRTKDNI RANQPENAQQ GINQAYESLT DGLGRTASAL IGNPIKVYNR GAGAGSALAT  2040
AIRGAPAAAV APVSASARAV HYALLGLRNR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000820G0540

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160964.1	0.0	autophagy-related protein 2
TrEMBL	M7ZNZ9	0.0	M7ZNZ9_TRIUA; Autophagy-related protein 2
STRING	TRIUR3_21993-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-124	NAC family protein