PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000812G0550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 1025aa MW: 112449 Da PI: 5.0307 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.8e-09 | 50 | 76 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 +g+WT+eEd +l +av+ + g++Wk+I PH01000812G0550 50 KGNWTPEEDAILSRAVQTYKGKNWKKI 76 79************************9 PP | |||||||
2 | Myb_DNA-binding | 59.2 | 8.8e-19 | 119 | 165 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++ + v+++G++ W+tIa+ ++ gR +kqc++rw+++l PH01000812G0550 119 KGPWSKEEDEIITQMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 165 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 44.1 | 4.8e-14 | 171 | 213 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++++G++ W+ + + gRt++ +k++w+ PH01000812G0550 171 KDAWTQEEEITLIHAHRMYGNK-WAELTKILR-GRTDNAIKNHWN 213 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.144 | 45 | 113 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.22E-5 | 47 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.048 | 49 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-6 | 50 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-11 | 51 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.18 | 114 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-30 | 116 | 212 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-18 | 118 | 167 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-15 | 121 | 165 | No hit | No description |
Pfam | PF13921 | 9.9E-18 | 122 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-27 | 126 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.461 | 170 | 220 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-13 | 170 | 218 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.61E-10 | 173 | 213 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-19 | 174 | 220 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1025 aa Download sequence Send to blast |
MTSDKGKASK NGGEASGLSS APHEGEVSNE PQRRRSLNGR TTGPTRRSTK GNWTPEEDAI 60 LSRAVQTYKG KNWKKIGIAY LIYLCFHSCF STICFPFLLM RTPPCVLSWQ KVLNPELVKG 120 PWSKEEDEII TQMVNKYGPK KWSTIAQALP GRIGKQCRER WHNHLNPGIN KDAWTQEEEI 180 TLIHAHRMYG NKWAELTKIL RGRTDNAIKN HWNSSVKKKV DSYMSSGLLA QAPCLPLIEY 240 PAHCNSSSVM IQQNSEDNGS NAVQEVEDSS GCSQSLDTVS CSQVQNANVA LGCDLQVNVE 300 ANKKEAQDSH SSMCQEACYT STEAVASALP EVHYHVSSSN FDPDKLLQQE FAQRMNLQMD 360 IDEVPSNSMF VDNKTICSTE NHERSLVPYD AAPVMPISML PSVSGAEQKP DFMSEANFNS 420 PNCLKSELWQ DISLQSLLSG PDAIDADSFS RLNHQPYAYS SKVDTNFLTP PYPLHTSNPS 480 SMMGTAYAQS PLMPVPPSHI CSNGLPDALD NTADPREMPV SQAEMVIHTN NSFGDAEQSA 540 NPGSSDCGHG ASAMMESIPE YRDQQLTDAE EPGTNSTAKE TSLTQSEAAS DEKVDGALFY 600 EPPRFPSLDV PFVSCDLVTS GDLQEYSPLG IRQLMRSTMN VTTPLRLWGS PTHDESPDVV 660 LKSAAKSFIC TPSILKKRQR DLLSPIPDKR IEKKSVTGKD GGVSDTSSIS TQTCCMNATI 720 NEAIVIESVF CTERSVSSKP LEKKLEFSDE NKENLDETTE QAKEGRNAGN EQPVDKEARG 780 EQYSATNIVN TNNDLPENLQ PAGILVEHNG IDPPDHGANA INQKINTNPE SLLACKEGMY 840 PKSKPAELIV EKSSPCINVD YEYVNLLADT PGVKRGLESP SAWKSPWFID MQFQGSYFVS 900 PGDRTYDALG LVKQINVHSA AALAEAREVL ASGNRCDDRN SDKENRGNTD AKKEPGTSKL 960 QTKVMAEARV LDFNECTTPV RSAGNKLSGS LDRSASWHLI ESLTSCFHCL DAAYMLGAYS 1020 RPVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-54 | 50 | 220 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-54 | 50 | 220 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000812G0550 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878027.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB3R-4-like | ||||
TrEMBL | Q2QV96 | 0.0 | Q2QV96_ORYSJ; Myb-like DNA-binding domain containing protein, expressed | ||||
STRING | ORGLA12G0066300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 4e-93 | myb domain protein 3r-4 |