PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000810G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 318aa    MW: 35412.3 Da    PI: 6.9566
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000810G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like49.11.3e-151641932655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +AtPk il+lm+ +gLt++h+kSHLQkYR+
  PH01000810G0130 164 EATPKGILRLMNSDGLTIYHIKSHLQKYRS 193
                      4****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.55E-6163193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-14163194IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-11164194IPR006447Myb domain, plants
PfamPF143796.8E-22224270IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAQFDCPLGE ALPVMQTAKT PFRSSENELY RPLDPLLLRD HSVRTYYVRP QQRNAAQAPP  60
SLKLPLPQQQ QQQQERVHGL FSNTSTTRLL GGEPETHSFS PHVLMMDASC VLGYLKTLKV  120
ASPILPVMEA TSLQSQMENQ LSRSCIGAPV VTPTGNVSAP AGPEATPKGI LRLMNSDGLT  180
IYHIKSHLQK YRSAKYMPAS SEGKQREKRA TGNDIQNLDP KTGMQITEAL RAQLDVQRHL  240
HEQLEIQRNL QLRIEEQGKK LQKMFEDQLK VSRNVMESSP ELDMVFPSEQ DDAFDDVQLL  300
SVASGSYDDA GFPSKMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000810G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019511e-115AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960202.11e-125uncharacterized protein LOC101784276
RefseqXP_004960204.11e-125uncharacterized protein LOC101784276
RefseqXP_015636269.11e-125uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636270.11e-125uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636271.11e-125uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636272.11e-125uncharacterized protein LOC4337318 isoform X1
RefseqXP_025880593.11e-125uncharacterized protein LOC4337318 isoform X1
TrEMBLG9C2U81e-127G9C2U8_ORYPU; Putative Myb-like DNA-binding domain-containing protein
STRINGOPUNC04G26200.11e-125(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.18e-46G2-like family protein