PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000803G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 386aa    MW: 39927.5 Da    PI: 4.5987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000803G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.59.9e-08278318954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  PH01000803G0670 278 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 318
                      69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-11274327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13274329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-11275323No hitNo description
PfamPF000105.2E-5278318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDHCFSDMIL SESAWSGGGG SGDGGAVVLP PDVGVDGSGM TVLERLVLDE ALTAAILELQ  60
GIQEPCGGKM VPPPAGGDVE AAVAFAAMET ATPAYADVDG DVLQRQQHHH RHQGAMGMAV  120
DYDLTPATPA VTLSNVPPAF TNGTAVDGGI VDAAVFSGND AADAPRVENP LCSLFASSTT  180
GDGGIQIAFS TSASAPASKR AKPSLSSSSS SISFDGRSSG NGGEDPQYEP DTEALAQVKE  240
MIYRSAAMRP VTLGTEDAGE RPRRRNVRIS SDPQTVAARQ RRERISERLR VLQKLVPGGA  300
KMDTASMLDE AANYLRFLKS QVRELQTLDR RNYANATVNS FTPAMAAGAG PLSYYNGNGM  360
PAFAFPAAAE TLAGAGAGAV HEQLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000803G0670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-158AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-158AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-158AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-158CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656601.11e-127transcription factor bHLH87
RefseqXP_020201013.11e-127transcription factor SPATULA-like isoform X1
RefseqXP_020201014.11e-127transcription factor SPATULA-like isoform X2
TrEMBLA0A1E5ULC61e-137A0A1E5ULC6_9POAL; Transcription factor bHLH87
STRINGONIVA01G07440.11e-131(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-35bHLH family protein