PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000780G0510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 332aa    MW: 34866.9 Da    PI: 5.1323
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000780G0510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.4e-081855438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     + C+ ++ + ++lfC+ +  +lC+ C    H g    H 
  PH01000780G0510 18 KACDACGAEAARLFCRADAAFLCAGCDARAH-GpgsrHA 55
                     57*************************9999.5455575 PP
2zf-B_box22.91.8e-0757101341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC +C   +H+       H++ p
  PH01000780G0510  57 VWLCEVCEHAPAAVTCRADAAALCVTCDADIHSAnplarrHERLP 101
                      679*****************************6688888898877 PP
3CCT69.21.1e-23243286144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  PH01000780G0510 243 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 286
                      9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.3E-91559IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4951559IPR000315B-box-type zinc finger
PfamPF006439.8E-61854IPR000315B-box-type zinc finger
CDDcd000214.73E-82059No hitNo description
PROSITE profilePS5011910.50955102IPR000315B-box-type zinc finger
PfamPF006438.8E-657102IPR000315B-box-type zinc finger
CDDcd000218.44E-858102No hitNo description
SMARTSM003368.2E-1060102IPR000315B-box-type zinc finger
PfamPF062039.4E-18243285IPR010402CCT domain
PROSITE profilePS5101716.876243285IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDDEKSVGG AYWGLAAKAC DACGAEAARL FCRADAAFLC AGCDARAHGP GSRHARVWLC  60
EVCEHAPAAV TCRADAAALC VTCDADIHSA NPLARRHERL PVAPFFGALA DAPKPFASSG  120
LGGGAGAHGT AAADDDGSNE AEAASWLLPE PDHGQQKDGP VGATDVLFAD SDPYLDLDFA  180
RSMDDIKAIG VQNSLPELDL TGAKLFCSDH SMNHSVSSSE AAVVPDAAAG AAPVPVVSKG  240
REREARLMRY REKRKSRRFE KTIRYASRKA YAETRPRIKG RFAKRTTGAQ AEADADGEDA  300
MEHEEMYSSA AAAVAALMAP GPDADYGVVP TF
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000780G0510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0953800.0FP095380.1 Phyllostachys edulis cDNA clone: bphylf044g15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.11e-173zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A3Q8AHR50.0A0A3Q8AHR5_9POAL; Constans-like protein
STRINGAC233888.1_FGP0021e-167(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.17e-60CONSTANS-like 3