PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000769G0620
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 802aa    MW: 88407.8 Da    PI: 4.8925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000769G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-17146193148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ l ++v+ +G g+W+ + r  g++R++k+c++rw ++l
  PH01000769G0620 146 KGPWTPEEDKSLREYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 193
                      79******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.342141197IPR017930Myb domain
SMARTSM007171.2E-15145195IPR001005SANT/Myb domain
PfamPF002492.7E-16146193IPR001005SANT/Myb domain
SuperFamilySSF466897.52E-23147220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-25147205IPR009057Homeodomain-like
CDDcd001671.71E-11148193No hitNo description
PROSITE profilePS500905.134194275IPR017877Myb-like domain
SMARTSM007170.0059198344IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-11206219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-11284341IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MPKLDCNEYW DTARPPPPQQ QQKQQQQSSA ARDSRVSLSP PRNWIRFGVV ADAFAWFDSC  60
GFACAELWGA RGFLWHRITG PKMRSVKMEE PALDLPELPK METNSPPLSR SDDDDDETED  120
DSDSNGGEDE QVGVGGRDGG APALKKGPWT PEEDKSLREY VEAHGEGNWN QVQRNAGLNR  180
CGKSCRLRWA NHLRPDLKKG PFDDEEEQKI IELHAMMGNK AGGVPAGGGG PAREDGLRGK  240
DGRWVEDDRW EEDDRRGVEG RRQEHSRRGE IREYLKSGKY RICSHLTRYQ ILLCLSSLYD  300
ISAFLTTIAA AALLVYNSID HGLYLLPGRT DNEIKNYWNT RSKRLQRAGI PLYPDSVLSQ  360
VSNQDINCLS PDEPRGKKRP NELSQGNGIE FDEIVFENLD YKKHAGDILV PNFAIPNSLS  420
IDAMNPLKCL ASSGSIVSGH NGSLTCEQLP GEPEKTCYST DFNSGITKNQ SVPVGSAIAS  480
GHPILNGNFS TSGTIQRPMK MELPSLQYPN YDLSNNWLYN CPSGSPIEQV DTFTQSPASV  540
SLKSEYISSQ NTGLLDALVQ EGHGLGNFST SGTIQRPMKM ELPSLQYPNY DLGNNWLYNC  600
SSGSPIEQVD TFTQSPASVS LKSEYISSQN TGLLDALVHD GHGLEDPTKS QGSFEVSFPP  660
ASYNQVLQSN AYPMSSSSSV LGDSLFESNS LDEFQTSKSP SSFDALFVGS KHHADTGFPD  720
KYLSAWVDSW RPDASREASF LNEESPHSKD QSINGTFDVL LHEDSCKARL STAGHGHQLG  780
LESCPWKSMP GACHMSEFPN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-16140220180B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000769G0620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7309006e-65EU730900.1 Brachypodium distachyon clone BAC DH003L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657115.12e-78PREDICTED: transcription factor GAMYB-like, partial
TrEMBLJ3MFN01e-77J3MFN0_ORYBR; Uncharacterized protein
STRINGOB06G28240.12e-78(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.12e-31myb domain protein 120