PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000767G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 370aa    MW: 38503.7 Da    PI: 9.5921
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000767G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.84e-34501591112
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 
                      a+g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a   i++l+++  ++a ++ a++++ +a++ + ++++  +
  PH01000767G0040  50 ATGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAIEWLINAASVNIDKLPSL--DPAAFF-AVTEQAEADAGKVKHQQVCK 140
                      5899*************************************************************..444233.22333333322222222222 PP

              TCP  95 a.kskksqksaasalnlak 112
                        +s+ s++s+ s l+ ++
  PH01000767G0040 141 SgCSSTSETSKGSELSRSR 159
                      2233333333332222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3352159IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22153111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEAVGDAAGA GEGEGAPGRT QGRAKRGRGV NDGLEQQGLG AASRIYRVRA TGGKDRHSKV  60
YTAKGIRDRR VRLSVPTAIQ FYDLQDRLGY DQPSKAIEWL INAASVNIDK LPSLDPAAFF  120
AVTEQAEADA GKVKHQQVCK SGCSSTSETS KGSELSRSRS DSRVGGSRDK EVTVVSTSAQ  180
AASFTELLTG VGSAGAIGAA EQRRSWQPPS VPAVAADCVG IAHPGKGAQG VSTYGFSSST  240
ASSFGNVPPI GMAPAQPFNF ASSAEMMHFS LVQDAFAAAS APAGDYNLNF SMSSGFLVGN  300
RGTLQSNSQS HFSGHHQHLQ RLDGPSPPFL FGHAAAAAHP ALENQLTASA ALQLRDGFRH  360
SGMKEKSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2758112155Putative transcription factor PCF6
5zkt_B8e-2758112155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000767G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644443.11e-160transcription factor PCF6
SwissprotQ10CE81e-116PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A1D6GG321e-159A0A1D6GG32_MAIZE; Transcription factor TCP2
STRINGGRMZM2G089361_P011e-160(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2