PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000759G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 585aa    MW: 62882.3 Da    PI: 8.8753
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000759G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.3e-083573892254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +yps  ++  LA+++gL+ +qV++WF N R +
  PH01000759G0070 357 RPYPSDVDKHILARQTGLSRSQVSNWFINARVR 389
                      79*****************************88 PP
2BELL68.11.7e-222312821970
             BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                      Vd+rY++y+eq++++++ Feavag  +a+ Yt+lA+++iSrhFr+L+d i++
  PH01000759G0070 231 VDRRYRRYCEQMRALAGGFEAVAGERTAAAYTALASRTISRHFRNLRDGIVG 282
                      9************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-16137282IPR006563POX domain
PfamPF075261.1E-25143280IPR006563POX domain
PROSITE profilePS5007111.807330393IPR001356Homeobox domain
SMARTSM003896.5E-7333397IPR001356Homeobox domain
CDDcd000862.88E-11333394No hitNo description
SuperFamilySSF466893.81E-16334400IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-26336399IPR009057Homeodomain-like
PfamPF059201.2E-16350389IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAADAAA ASVGTLMPAM DEGAPELFGL HAGMELVGMR GLTAMQPGTT  60
WAAASAVHSK AVLMDAGGDG STMRFLSEQQ QHHQLSQAPL SLSLFRPEGV LHQHLGGSSR  120
QQPAAAAWMH DSSAAHGHGA WHLSSSRFLL PAQQLLQEFC ILPVDSTKRT KAPKPRQQEE  180
GAPAGRRRRP LGPRRRRSRP WTRWSCRGSR TSSTSCSKRY LHEGPLPSRP VDRRYRRYCE  240
QMRALAGGFE AVAGERTAAA YTALASRTIS RHFRNLRDGI VGLLQAVRKA LGEKDVTVPG  300
MTRGETPRLR VLDQSIRHQK ALHQAGMMDS HPWRPQRGLP ERAVTVLRAW MFEHFLRPYP  360
SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYV EEMKDQDGGS GGGQGSLNPN  420
RSSHASDGQL QVDGGDGDDG EQKPTRAQLL HDAGSLASVV DIGSVAGAGA GARMESFGTM  480
DHLDFDAYDS QGGFGTGGGG GVSLTLGLQQ HDSHDSGGVN IAFGAPPSHD GGAAGFLFPA  540
GEQMDGVHSG HGHQVQFGAG EASHAQEHYR GLSAGFHLLR DLGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-15339397159Homeobox protein Meis2
5bng_B2e-15339397159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000759G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628192.10.0homeobox protein BEL1 homolog
TrEMBLA2XBX60.0A2XBX6_ORYSI; Uncharacterized protein
STRINGOS03T0124000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-74TALE family protein