PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000749G0800

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 272aa MW: 29896.8 Da PI: 9.0775

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000749G0800	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.2	2.1e-18	16	110	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+++ + L++a++e+ e+l+rg+l++ +We+v++++ + + +s +qCk+k++nl+kr+k + ++ + +s++ss++p+f++l PH01000749G0800 16 EWSDEAIGSLLDAYSERFEQLKRGNLRGRDWEDVAAAVtkqqqqqhkAGGSWGKSVEQCKNKIDNLKKRFKVECQRIAGSSSGTSSQWPWFKKL 109 5****************************************99954455599*************9988888889**********9 PP trihelix 86 e 86 e PH01000749G0800 110 E 110 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.6E-19	14	111	No hit	No description
Gene3D	G3DSA:3.40.1160.10	2.1E-12	163	234	IPR001048	Aspartate/glutamate/uridylate kinase
SuperFamily	SSF53633	2.09E-8	165	225	IPR001048	Aspartate/glutamate/uridylate kinase

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MFYPYEIQKN TEDREEWSDE AIGSLLDAYS ERFEQLKRGN LRGRDWEDVA AAVTKQQQQQ 60 HKAGGSWGKS VEQCKNKIDN LKKRFKVECQ RIAGSSSGTS SQWPWFKKLE FIVGNATSIL 120 SPKPASTDDV KLSHRQQQNN KSCIPSRAAL LSIGVGSRLT PFSNPRWKRA LLKIGGTALV 180 GAASENVDPK VIMLIAREVQ VASHHGVQVA IVVGSQNIYC GDTWTAAAGI DRAATCPIGN 240 LNDTCIVTKE RCRIVTIDTE INQGPSKPND L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000749G0800

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823789.1	2e-95	uncharacterized protein LOC112899509 isoform X1
TrEMBL	A0A0E0KQ69	3e-97	A0A0E0KQ69_ORYPU; Uncharacterized protein
STRING	OPUNC04G09570.1	5e-98	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1935	34	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	1e-65	Trihelix family protein