PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000746G0370
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 445aa    MW: 49504.4 Da    PI: 5.2527
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000746G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.6e-34141042101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye++++++++ ++ w+ +g sfvv +++ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F kg+++ l+
  PH01000746G0370  14 FLSKTYEMVDNPATDAVVAWTPSGASFVVANQDEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEGFLKGQRHRLK 98 
                      9***************************************************************9998.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  PH01000746G0370  99 NIHRRK 104
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.14E-3310103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGGGSGGAS LPPFLSKTYE MVDNPATDAV VAWTPSGASF VVANQDEFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEGFL KGQRHRLKNI HRRKPIFSHS SHTQGAGPLG  120
DTERRDYEEE IERLKCDNAA LTLELEKNAQ KKLDMERRMQ ALEDKLSIVE GQQENLISYV  180
RDIVKAPGFL SSFVQQSDHH RKKRRLPKPI SFHEDENTQG NQIMQCDLTN SPAHALYRES  240
FDKMESSLNS LENFLREASE AFGNDILYDN GVPGPSSSVV LREIHSSGES DPHVPSPPSR  300
MHTSSAGVGD SHSSYDIAES TSCAETADSS PLPQTHSRAD SRAKAAEIDV NSEPAVTETG  360
PSRDQPAEDP PVVTTGVNDG FWQQFLTEQP GSSGAHQEAQ SEWRDGDNKA DQMKTADREK  420
IWWGKKNVEQ ITEKLGHLTS AEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-28410319129Heat shock factor protein 1
5d5v_B6e-28410319129Heat shock factor protein 1
5d5v_D6e-28410319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000746G0370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615651.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A0E0JIQ60.0A0A0E0JIQ6_ORYPU; Uncharacterized protein
STRINGOPUNC01G15930.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.16e-86HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]