PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000735G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 620aa    MW: 67709.5 Da    PI: 6.511
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000735G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.9e-28208261155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  PH01000735G0360 208 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 261
                      79*******************.********************************8 PP
2Response_reg79.51.1e-26251331109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l + +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  
  PH01000735G0360  25 VLAVDDDPTCLKVLENLLLRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITH 116
                      799********************.***************888888*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +e+l++
  PH01000735G0360 117 GACDYLLKPVRIEQLRT 133
                      ***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.7E-1861619IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.4E-4222166No hitNo description
SuperFamilySSF521725.98E-3522144IPR011006CheY-like superfamily
SMARTSM004485.0E-3223135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.15924139IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.7E-2425134IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.66E-2726138No hitNo description
PROSITE profilePS5129411.34205264IPR017930Myb domain
SuperFamilySSF466894.84E-20205265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29206266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24208261IPR006447Myb domain, plants
PfamPF002492.2E-6210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MTVEERQGKV NGHGSRDQFP VGMRVLAVDD DPTCLKVLEN LLLRCQYHVT TTGQAATALK  60
LLREKKDQFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANGETQTV MKGITHGACD  120
YLLKPVRIEQ LRTIWQHVVR RRNCDTRNHG NDNDDAGQRV QAMNAEGENG GAHHNKRNSR  180
KGRDENGNDG DDSDENSNEN ADSLTQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKKILD  240
LMNVENITRE NVASHLQKYR LYLKRLSTDA SRQATLAAAL GGRNPAYINM NSPETFRHYN  300
AYGRYRPVST TTHSQPNNLL ARMNSPSAFG VHGLLPSQPL QLGHVQNNLS TSLNDLGGVN  360
NGNLIRGAHM STMVTGPSGN SFTSISNGAP LAPANNSVQT LELSNQQHLG RMCSSSAHPF  420
STLVGESPQF PDLGRSSNTW QPAVPSNIQE LGHNDSMSPH VNGPRIEPVS GFTTPSNQNP  480
LLGNEMQSQI PSLASNALPM SFNQETVPFT YGSCTDSREM LNDHLAFSNS GISTSLPNLR  540
IDISVVPRQT LDGGNAGGVP TLQDGRIDQQ AVSNQLNYNN DLMGTSRLQR GPSGGLDDIF  600
RPDREDGGVP FIDGDWELV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-25206267364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000735G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626716.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0D9VD050.0A0A0D9VD05_9ORYZ; Two-component response regulator
STRINGLPERR02G05460.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-113response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]