PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000729G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 381aa    MW: 42554.8 Da    PI: 6.9976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000729G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52161431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l pGfrFhPtdeelv +yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s
  PH01000729G0360  16 LLPGFRFHPTDEELVGFYLKRKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTSAGFWKATGTDRPIYS 108
                      579***************************.89***************9888999*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkk+Lvfykgra +g ktdW+mhe+rl
  PH01000729G0360 109 SeGTKCIGLKKSLVFYKGRAARGIKTDWMMHEFRL 143
                      956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-5713174IPR003441NAC domain
PROSITE profilePS5100556.97416174IPR003441NAC domain
PfamPF023651.1E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEERNDISMD KSDEVLLPGF RFHPTDEELV GFYLKRKIQQ KPISIELIRQ LDIYKFDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTSAGFWKAT GTDRPIYSSE GTKCIGLKKS  120
LVFYKGRAAR GIKTDWMMHE FRLPSLTDPS LPKRPIDKNI PPNDSWTICR IFKKISSMAQ  180
QALSHTWGPP LPGATEPDIF SALQSVQASQ FALESSSCSL QVAAPASQFT SKYALQGQQQ  240
QQFQKPNNTQ DGSSCKVINF NCSPSVEVQN GPIILPFETQ TSQKTAGAAP LFFDAQFGQP  300
DQINGFAVDS SANINGGIGN RSQDSPTGNA GNGFSMNNDW ETLGRINFPF DLGADSSDEW  360
RCSIPWESFL SPTVHAEMPH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521617717168NO APICAL MERISTEM PROTEIN
1ut4_B4e-521617717168NO APICAL MERISTEM PROTEIN
1ut7_A4e-521617717168NO APICAL MERISTEM PROTEIN
1ut7_B4e-521617717168NO APICAL MERISTEM PROTEIN
3swm_A6e-521617720171NAC domain-containing protein 19
3swm_B6e-521617720171NAC domain-containing protein 19
3swm_C6e-521617720171NAC domain-containing protein 19
3swm_D6e-521617720171NAC domain-containing protein 19
3swp_A6e-521617720171NAC domain-containing protein 19
3swp_B6e-521617720171NAC domain-containing protein 19
3swp_C6e-521617720171NAC domain-containing protein 19
3swp_D6e-521617720171NAC domain-containing protein 19
4dul_A4e-521617717168NAC domain-containing protein 19
4dul_B4e-521617717168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000729G0360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659439.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-100FEZ_ARATH; Protein FEZ
TrEMBLA0A0D9X8820.0A0A0D9X882_9ORYZ; Uncharacterized protein
STRINGLPERR08G13170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-102NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]