PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000724G0700
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 329aa    MW: 36331.4 Da    PI: 4.9918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000724G0700genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11151193754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PH01000724G0700 151 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 193
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.269144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16148214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9151193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15151207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-5151198No hitNo description
CDDcd048734.29E-4243299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELEEQAFLE ELFSLRRDAW ECNAIGDIFS PACAAMDCFQ ERHQATVSVL PTFTACYEQP  60
QQPAAPGFDC LSEVYGNAAF GPNAGAGDYG NEMGFLDVIE PKAPLVEGGL GVCKVEPGLV  120
EGGGGFNAGA VPPAPAPKKK RVEGMPSKNL MAERRRRKRL NDRLSMLRSV VPKISKMDRT  180
SILGDTIDYM KELLERIRQL QGEIEQEQET PGVLSVFREL NPNEMLARNT PKFDVERKDG  240
GDTRVEIYCA AKPGLLLSTV STLETLGLDI QQCVVSCFND FGMHASCSEA ILVADAEGEY  300
QRGRDKAGAV QERRLRRRRL LVEERRRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138158KKRVEGMPSKNLMAERRRRKR
2152159ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000724G0700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998890.0FP099889.1 Phyllostachys edulis cDNA clone: bphyst008e05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693904.11e-150PREDICTED: transcription factor bHLH93-like
TrEMBLA0A0E0E6I51e-151A0A0E0E6I5_9ORYZ; Uncharacterized protein
STRINGOBART06G27800.11e-147(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-48beta HLH protein 93