PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000722G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GeBP | ||||||||
Protein Properties | Length: 219aa MW: 23371.6 Da PI: 7.0773 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 49 | 1.7e-15 | 21 | 108 | 3 | 96 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +q+lw++ De++lL G f+a++g+ p d+ a++e +++s+s++ + + K++rLK Kf + + +h++ + +l+ + PH01000722G0060 21 VQKLWTDADEVALLTGAAAFRARHGAAPRLpDMGALFESLRGSLSMHLDQAKVYYKLKRLKSKFLHSAPA-------ATGGPHERRVRDLCADL 107 79************************98877*********************************998877.......44556666666666666 PP DUF573 96 W 96 W PH01000722G0060 108 W 108 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.0E-15 | 22 | 109 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAIAAPASFS AGGGGGGQGA VQKLWTDADE VALLTGAAAF RARHGAAPRL PDMGALFESL 60 RGSLSMHLDQ AKVYYKLKRL KSKFLHSAPA ATGGPHERRV RDLCADLWGA ELAPPVEADA 120 YAEEGDADEG YIGGDVEVAV RLPVVSEVLD EYWRRNARAL SGVSLEKGLA LLRAEEGRVA 180 ETKWRRQLGA EMRTQVRRHD LAKEVYGLLI DAVKGLGP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000722G0060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564112.1 | 7e-95 | STOREKEEPER protein | ||||
TrEMBL | I1GZW5 | 2e-93 | I1GZW5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G46160.1 | 3e-94 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 |