PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000718G0250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 25612.8 Da PI: 8.9178 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 61 | 115 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+++++++q + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k+ PH01000718G0250 61 KKRRLSDKQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKN 115 56689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 110.7 | 9.8e-36 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++q+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+++l+e PH01000718G0250 61 KKRRLSDKQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKNKLMEEEFAKLRAAHDAVVLQNCHLETELLKLKDRLAE 152 9**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.714 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-16 | 59 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.23E-16 | 60 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.23E-15 | 61 | 116 | No hit | No description |
Pfam | PF00046 | 7.9E-16 | 61 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-17 | 61 | 115 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.0E-6 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.0E-6 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSREEGEKLL FPSFAFPESF PEAATSRSGS AGGEQKKARQ RRRRKARPAA EGESGGDDQA 60 KKRRLSDKQA RFLEMSFKKE RKLETPRKVQ LAAELGLDAK QVAVWFQNRR ARHKNKLMEE 120 EFAKLRAAHD AVVLQNCHLE TELLKLKDRL AEVEEEKSKL MVTAAETATG VSSPSSSSFS 180 TVTHHPALVG QFGVEEEADL TYMSDYAYNN YMMDLAAGGY LGVYDQFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 63 | RRKARPAAEGESGGDDQAKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000718G0250 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073446 | 1e-139 | AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence. | |||
GenBank | AY554034 | 1e-139 | AY554034.1 Oryza sativa (indica cultivar-group) clone OG05G01 Hox12 (hox12) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649569.1 | 1e-106 | PREDICTED: homeobox-leucine zipper protein HOX12 | ||||
Swissprot | Q10QF2 | 1e-105 | HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | A0A0D9VQT1 | 1e-108 | A0A0D9VQT1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G06520.1 | 1e-108 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-36 | homeobox protein 40 |
Publications ? help Back to Top | |||
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