PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000718G0250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25612.8 Da    PI: 8.9178
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000718G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-1861115357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      k+++++++q + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k+
  PH01000718G0250  61 KKRRLSDKQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKN 115
                      56689************************************************95 PP

2HD-ZIP_I/II110.79.8e-3661152293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      kkrrls++q+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  +L+++l+e
  PH01000718G0250  61 KKRRLSDKQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKNKLMEEEFAKLRAAHDAVVLQNCHLETELLKLKDRLAE 152
                      9**************************************************************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.71456116IPR001356Homeobox domain
SMARTSM003895.8E-1659120IPR001356Homeobox domain
SuperFamilySSF466891.23E-1660122IPR009057Homeodomain-like
CDDcd000861.23E-1561116No hitNo description
PfamPF000467.9E-1661115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-1761115IPR009057Homeodomain-like
PRINTSPR000315.0E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000315.0E-696112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSREEGEKLL FPSFAFPESF PEAATSRSGS AGGEQKKARQ RRRRKARPAA EGESGGDDQA  60
KKRRLSDKQA RFLEMSFKKE RKLETPRKVQ LAAELGLDAK QVAVWFQNRR ARHKNKLMEE  120
EFAKLRAAHD AVVLQNCHLE TELLKLKDRL AEVEEEKSKL MVTAAETATG VSSPSSSSFS  180
TVTHHPALVG QFGVEEEADL TYMSDYAYNN YMMDLAAGGY LGVYDQFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14263RRKARPAAEGESGGDDQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000718G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734461e-139AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence.
GenBankAY5540341e-139AY554034.1 Oryza sativa (indica cultivar-group) clone OG05G01 Hox12 (hox12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649569.11e-106PREDICTED: homeobox-leucine zipper protein HOX12
SwissprotQ10QF21e-105HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLA0A0D9VQT11e-108A0A0D9VQT1_9ORYZ; Uncharacterized protein
STRINGLPERR03G06520.11e-108(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-36homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]