PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000718G0100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 227aa MW: 24908 Da PI: 8.9273 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 8e-19 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k PH01000718G0100 60 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 113 56689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 110.6 | 1.1e-35 | 60 | 151 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k + +++++L++a+d+++ +n++Le+e +L+++l+e PH01000718G0100 60 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMGEEFAKLRAAHDTVVLQNCHLETELLKLKDRLAE 151 9**************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-16 | 54 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.779 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-16 | 58 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-17 | 60 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.5E-16 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.96E-16 | 60 | 115 | No hit | No description |
PRINTS | PR00031 | 4.9E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.9E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSGEEGEKLL FPSFVFPESF PEAATSGSGS GGEQKKARQR RRRRARPAAA GESGGDDQAK 60 KRRLSDEQAR FLEMSFKKER KLETPRKVQL AAELGLDAKQ VAVWFQNRRA RHKSKLMGEE 120 FAKLRAAHDT VVLQNCHLET ELLKLKDRLA EAEEEKSKLM ATATGGGGVS SPSSSSFSTV 180 THQPALVGQF GVEEADLTYM SDYAYNNYMM DLAAGGYLGG VYDQFS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 62 | RRRARPAAAGESGGDDQAKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000718G0100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY554034 | 1e-137 | AY554034.1 Oryza sativa (indica cultivar-group) clone OG05G01 Hox12 (hox12) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649569.1 | 1e-105 | PREDICTED: homeobox-leucine zipper protein HOX12 | ||||
Swissprot | Q10QF2 | 1e-105 | HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | A0A0D9VQT1 | 1e-107 | A0A0D9VQT1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G06520.1 | 1e-107 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-35 | homeobox protein 21 |
Publications ? help Back to Top | |||
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