PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000708G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 530aa    MW: 56990.8 Da    PI: 6.7008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000708G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS223.98.1e-692154102200
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkf 93 
                      v +L++cA+ +++ ++ +a+ +Larl e+as +g +pm+R+aayf+eALa r++r++++++++ pp+e +++   ++ ++al++++ ++Pi++f
  PH01000708G0250 215 VGALTACADSLAACNHDAANYYLARLGETASAAGpTPMHRVAAYFAEALALRVVRMWPHVFDISPPRELTDDAiNDDDAMALRILNSITPIPRF 308
                      678******************************************************************988889999**************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+t N+ +l+a+eg+ervHiiDfdi+qGlQWp+Llq+La+Rpe+p+++RiTgvg+    s++ l+etg rLa++A++lg+ fef++ v++rle
  PH01000708G0250 309 LHFTLNERLLRAFEGHERVHIIDFDIKQGLQWPSLLQSLAARPEPPAHVRITGVGE----SRQGLQETGARLARVATALGLAFEFHA-VVDRLE 397
                      ********************************************************....9**************************.7***** PP

             GRAS 188 dleleeLrvkpgE 200
                      d++l++L+vk+g+
  PH01000708G0250 398 DVRLWMLHVKRGD 410
                      **********975 PP
2GRAS81.61.3e-25410506279374
             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsv 370
                      + +r+k E++ ++rei+n+va ega+r+erhe+++ Wr+r+e+ GFk++ +++++a+q +++ r+++ d y+v+ +   + l+l W d++L++v
  PH01000708G0250 410 DPARAKAEEM-FAREIRNAVAFEGADRIERHESFAGWRRRMEDGGFKNAGIGDREAMQGRMIARMFAPDKYSVQAQgdGEGLTLRWLDQALYTV 502
                      5689999*99.********************************************************888***9654367788*********** PP

             GRAS 371 SaWr 374
                      +aW+
  PH01000708G0250 503 TAWT 506
                      ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.039188529IPR005202Transcription factor GRAS
PfamPF035142.8E-66215410IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLAGCSFSSR HQMSTAQRFD ILPCGFSKRS NRGDAAAPRV AGDARSSTTC SFRTHPAPPV  60
TQAVSWGAKP EPGGNGGGVW ERNRAVKRAH EEEAAEYGPI VRAKRTRMGS DGDEVWFHQS  120
IAGTMQATAA GEGDEAEEEK VFLVPSAAAF PHGMAAGPSL AAAKEEEYSK SPSHSSSSSG  180
TDGGSSAMPP PPPRVHARNG VPSPGVAERE ALELVGALTA CADSLAACNH DAANYYLARL  240
GETASAAGPT PMHRVAAYFA EALALRVVRM WPHVFDISPP RELTDDAIND DDAMALRILN  300
SITPIPRFLH FTLNERLLRA FEGHERVHII DFDIKQGLQW PSLLQSLAAR PEPPAHVRIT  360
GVGESRQGLQ ETGARLARVA TALGLAFEFH AVVDRLEDVR LWMLHVKRGD PARAKAEEMF  420
AREIRNAVAF EGADRIERHE SFAGWRRRME DGGFKNAGIG DREAMQGRMI ARMFAPDKYS  480
VQAQGDGEGL TLRWLDQALY TVTAWTPASE GAGGSTVSAS TTASHSQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3422140826211Protein SCARECROW
5b3h_A2e-3422140825210Protein SCARECROW
5b3h_D2e-3422140825210Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000708G0250
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064490.0AK106449.1 Oryza sativa Japonica Group cDNA clone:002-103-E10, full insert sequence.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812393.10.0protein DWARF AND LOW-TILLERING
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A1E5WNH30.0A0A1E5WNH3_9POAL; Scarecrow-like protein 28
STRINGOB06G11610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-83GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]