PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000692G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 685aa    MW: 75828.6 Da    PI: 5.4828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000692G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-07524571347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v++ G g W+ I r        Rt  ++k++w+++
  PH01000692G0590 524 AWTLCEVRRLVDGVARCGAGKWSEIRRLAFasySYRTSVDLKDKWRNL 571
                      7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.645517576IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-10518575IPR009057Homeodomain-like
SuperFamilySSF466897.36E-14519577IPR009057Homeodomain-like
SMARTSM007174.9E-6521574IPR001005SANT/Myb domain
CDDcd116604.75E-17523573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEVGGSQDVL ENKNEENDIE KNGSSDPVVY QLVRVEGDGT FVPATEDEVL QFEHFLHDEE  60
VDMPSTEDVG RVEDFFTNDC VLLKKPDLEA GSSKLEITEV QTQNLDADLE VIQSRGNETL  120
VSVEECPVKE GRVQPSDDSL DLPSKCTVVH DQQTDKLNTE QGDNNIAQQD NASTETTKST  180
VLNDTCSAEK EKADACSRPV NDTSTGPSVS GVTSSVPDFS ILRGEVCLDN LTIRELQEAF  240
RATFGRQTTV KDKLWLKRRI TMGLTNSCNV PSSGCVVKDY KIIGKDAEQE IPDIEGIPKV  300
ELEATSLVRD QTLYPGNDRD SPSSSYYQSE DQRGSSKKLK RVPTDNDEPH GTLLAEQGSS  360
KRIRKPTKRY IEDLSDIETH DSPGKLSSPG KRPTHDEVLL KPQATPFHEV DSLSTTYPTR  420
KDTLGGFSVH VPYVLRMRRG RPRRNCISFL DHRPSVECTE VQTAVGMMSE KDGEQGNHKN  480
AEKEGGHIET TDNTEVQTVQ ANVFCSADAK PKIKRGLKRK HHRAWTLCEV RRLVDGVARC  540
GAGKWSEIRR LAFASYSYRT SVDLKDKWRN LIRASQTQLH TEKDVITSPS PTHTSTVYFS  600
LTSSFRPSCH FLLMDYPFSS LFYSAEQGGC PRKNNPSTIP IPPSILLRVK ELAGLQSQAG  660
DLAVPIKFSG LSSKVVQGKG SGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000692G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4961280.0KJ496128.1 Bambusa emeiensis MYB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0uncharacterized protein LOC100846611 isoform X2
TrEMBLA0A139Z3B70.0A0A139Z3B7_BAMEM; MYB1
STRINGBRADI3G57300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-77TRF-like 6