PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000688G0030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 190aa MW: 21055.4 Da PI: 9.8138 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 30 | 74 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W++ Ed+ + a ++ + +W+ +a++++ gRt+ + +++q PH01000688G0030 30 PWSKAEDKVFESALVTFPENvqnRWAHVAARLP-GRTAQEAWEHYQ 74 8********************************.****98777777 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1e-14 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qky PH01000688G0030 121 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKY 165 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.089 | 23 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.25E-11 | 24 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-5 | 27 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-7 | 30 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-5 | 30 | 68 | No hit | No description |
Pfam | PF00249 | 1.1E-5 | 30 | 74 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.291 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-18 | 116 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.7E-17 | 118 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 120 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-11 | 121 | 166 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAFYRGVGGP SSSWVAAPQA MMAPPPSSRP WSKAEDKVFE SALVTFPENV QNRWAHVAAR 60 LPGRTAQEAW EHYQALVADV DLIERGMVEA PDSWDDDAAS GGRGRGRLGG GGADERRRGV 120 PWTEEEHRLF LEGLEKYGRG DWRNISRWSV KTRTPTQVAS HAQKYFIRQA NATSRGDNKR 180 KSIHDITAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-13 | 27 | 92 | 7 | 72 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000688G0030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367954 | 1e-149 | AK367954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065H11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638220.1 | 7e-99 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-48 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | I1PW29 | 2e-98 | I1PW29_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0157700.1 | 4e-99 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 5e-43 | MYB family protein |
Publications ? help Back to Top | |||
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