PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000668G0390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 21994.4 Da PI: 5.5983 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 7e-19 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g PH01000668G0390 40 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 89 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.2E-33 | 40 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-36 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.774 | 40 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 40 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 40 | 98 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.6E-11 | 41 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.10E-29 | 41 | 99 | No hit | No description |
PRINTS | PR00367 | 8.6E-11 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDDTHEPASP TSPTVTSSSS SSSSSVAAKK RPRKDGRHPT YRGVRMRSWG KWVSEIREPR 60 KKSRIWLGTF ATAEMAARAH DVAALAIKGP AAHLNFPDLA HLLPRPASAA PKDVQEAASL 120 AATADFPSGA NAKSPDSSSD GSAPSPQPPP PHAEPDPDDA LFDLPDLLLD LRYESSSGLS 180 CGASWSVDDD VAGGGVFRLE EPLLWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-18 | 38 | 97 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000668G0390 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108473 | 1e-179 | AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence. | |||
GenBank | AL663000 | 1e-179 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. | |||
GenBank | AP014960 | 1e-179 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258282 | 1e-179 | AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581499.1 | 2e-82 | ethylene-responsive transcription factor ERF039 | ||||
Refseq | XP_015634439.1 | 2e-82 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q8LBQ7 | 2e-47 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0E0KTK3 | 2e-96 | A0A0E0KTK3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G18530.1 | 4e-97 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-47 | ERF family protein |
Publications ? help Back to Top | |||
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